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本文引用的文献

1
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.用于直接从临床样本中对寨卡病毒及其他病毒基因组进行MinION和Illumina测序的多重PCR方法。
Nat Protoc. 2017 Jun;12(6):1261-1276. doi: 10.1038/nprot.2017.066. Epub 2017 May 24.
2
Establishment and cryptic transmission of Zika virus in Brazil and the Americas.寨卡病毒在巴西及美洲的传播与隐秘扩散
Nature. 2017 Jun 15;546(7658):406-410. doi: 10.1038/nature22401. Epub 2017 May 24.
3
MinION as part of a biomedical rapidly deployable laboratory.作为生物医学快速可部署实验室一部分的MinION(测序仪) 。 (注:MinION是牛津纳米孔公司开发的一款便携式纳米孔测序仪,这里考虑到可能的专业性补充了相关信息,若严格按要求可不补充括号内容)
J Biotechnol. 2017 May 20;250:16-22. doi: 10.1016/j.jbiotec.2016.12.006. Epub 2016 Dec 6.
4
Times to key events in Zika virus infection and implications for blood donation: a systematic review.寨卡病毒感染关键事件的时间及对献血的影响:一项系统评价
Bull World Health Organ. 2016 Nov 1;94(11):841-849. doi: 10.2471/BLT.16.174540.
5
High Throughput Sequencing: An Overview of Sequencing Chemistry.高通量测序:测序化学概述
Indian J Microbiol. 2016 Dec;56(4):394-404. doi: 10.1007/s12088-016-0606-4. Epub 2016 Jul 9.
6
Mobile real-time surveillance of Zika virus in Brazil.巴西寨卡病毒的移动实时监测
Genome Med. 2016 Sep 29;8(1):97. doi: 10.1186/s13073-016-0356-2.
7
Oxford Nanopore MinION Sequencing and Genome Assembly.牛津纳米孔MinION测序与基因组组装
Genomics Proteomics Bioinformatics. 2016 Oct;14(5):265-279. doi: 10.1016/j.gpb.2016.05.004. Epub 2016 Sep 17.
8
Outbreak investigation for toxigenic Corynebacterium diphtheriae wound infections in refugees from Northeast Africa and Syria in Switzerland and Germany by whole genome sequencing.通过全基因组测序对来自东北非和叙利亚的难民在瑞士和德国发生的产毒白喉棒状杆菌创伤感染进行暴发调查。
Clin Microbiol Infect. 2016 Dec;22(12):1003.e1-1003.e8. doi: 10.1016/j.cmi.2016.08.010. Epub 2016 Aug 30.
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Aedes aegypti suppression in the Americas: historical perspectives.美洲埃及伊蚊的防控:历史视角
Lancet. 2016 Aug 6;388(10044):556-7. doi: 10.1016/s0140-6736(16)31225-9.
10
INFECTIOUS DISEASE. Mosquito hunters search for Zika vectors.传染病。蚊虫搜寻者寻找寨卡病毒的传播媒介。
Science. 2016 Jun 3;352(6290):1152-3. doi: 10.1126/science.352.6290.1152.

急性虫媒病毒感染:寨卡病毒和 MinION 监测。

Acute Vector-Borne Viral Infection: Zika and MinION Surveillance.

机构信息

Laboratory of Experimental Pathology, Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Salvador, Bahia 40296-710, Brazil.

Laboratory of Cellular and Molecular Genetics, ICB, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais 31270-901, Brazil.

出版信息

Microbiol Spectr. 2019 Jul;7(4). doi: 10.1128/microbiolspec.AME-0008-2019.

DOI:10.1128/microbiolspec.AME-0008-2019
PMID:31400093
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10957199/
Abstract

The MinION sequencer was launched by the Oxford Nanopore Technologies start-up as a disruptive technology for genome sequencing based on single-molecule synthesis. Its characteristics as a portable device, low cost, and simple library preparation have made it a good candidate for field researchers. MinION has been used to sequence a number of microorganisms, such as bacteria, viruses, and fungi. Based on the experience that characterized the Ebola virus genetic diversity in Guinea during the 2014-2015 outbreak, the ZiBRA (Zika in Brazil Real-time Analysis) project aimed to sequence a large number of Zika virus genomes during a mobile laboratory trip in northeast Brazil to provide important epidemiological information about the spread of this disease in this country. In response to the positive and rapid results obtained by the ZiBRA project, the Brazilian Ministry of Health and many leading institutions, such as the Pan American Health Organization and WHO, have shown interest in expanding the strategy used in this project to other countries dealing with arbovirus infection. *This article is part of a curated collection.

摘要

牛津纳米孔技术初创公司推出的 MinION 测序仪是一种基于单分子合成的基因组测序的颠覆性技术。它作为一种便携式设备、低成本和简单的文库制备的特点,使其成为现场研究人员的良好候选者。MinION 已被用于测序多种微生物,如细菌、病毒和真菌。基于在 2014-2015 年埃博拉病毒爆发期间描述几内亚病毒遗传多样性的经验,ZiBRA(巴西寨卡实时分析)项目旨在通过在巴西东北部的移动实验室旅行中对大量寨卡病毒基因组进行测序,为该疾病在该国的传播提供重要的流行病学信息。针对 ZiBRA 项目获得的积极和快速结果,巴西卫生部和许多主要机构,如泛美卫生组织和世界卫生组织,表现出了将该项目中使用的策略扩展到其他处理虫媒病毒感染的国家的兴趣。*本文是精选集的一部分。