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sp. nov.,分离自北极冻原土壤。

sp. nov., isolated from Arctic tundra soil.

机构信息

Marine College, Shandong University, Weihai, 264209, PR China.

State key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 Dec;69(12):3745-3750. doi: 10.1099/ijsem.0.003648.

Abstract

In the present paper, we describe a new species of the genus , designated as strain 1E403, which was isolated from a soil sample collected from the Arctic. Strain 1E403 was Gram-stain-negative, yellow-pigmented, rod-shaped, gliding and aerobic. Growth occurred at 4-37 °C (optimum, 28 °C), pH 6.0-9.0 (pH 7.0) and with 0-2 % (w/v) NaCl (0 %) on modified marine agar 2216. Phylogenetic analysis based on 16S rRNA gene sequencing revealed that strain 1E403 was affiliated with the genus and was more closely related to DSM 21790 (96.6 %) than to other species. genomic comparisons, including average nucleotide identity and the digital DNA-DNA hybridization values, showed 73.9 % and 18.8 % identity to the closest relative DSM 21790, respectively. The average amino acid identity value between strain 1E403 and DSM 1132 was 63.8 %. The DNA G+C content of the strain was 36.8 %, while the sole respiratory quinone was menaquinone-6. Iso-C and summed feature 3 (Cω7 and/or Cω6) were the major fatty acids (>10 %) of strain 1E403. The polar lipid profile of strain 1E403 contained phosphatidylethanolamine, four unidentified aminolipids and two unidentified phospholipids. Based on the phenotypic characteristics, chemotaxonomic characteristics and phylogenetic inference, strain 1E403 represents a novel species of the genus , and we propose the name sp. nov. The type strain of sp. nov. is 1E403 (=KCTC 62960=MCCC 1H00356).

摘要

在本论文中,我们描述了一个新的属种,命名为菌株 1E403,它是从北极的土壤样本中分离出来的。菌株 1E403 革兰氏阴性,呈黄色,杆状,滑行,需氧。在改良海洋琼脂 2216 上,生长发生在 4-37°C(最佳温度 28°C),pH 值 6.0-9.0(pH 值 7.0),0-2%(w/v)NaCl(0%)。基于 16S rRNA 基因测序的系统发育分析表明,菌株 1E403 与属有关,与 DSM 21790 (96.6%)的关系比与其他种的关系更密切。基因组比较,包括平均核苷酸同一性和数字 DNA-DNA 杂交值,显示与最接近的亲缘关系 DSM 21790 分别具有 73.9%和 18.8%的同一性。菌株 1E403 和 DSM 1132 之间的平均氨基酸同一性值为 63.8%。菌株 1E403 的 DNA G+C 含量为 36.8%,而唯一的呼吸醌是menaquinone-6。Iso-C 和总和特征 3(Cω7 和/或 Cω6)是菌株 1E403 的主要脂肪酸(>10%)。菌株 1E403 的极性脂谱含有磷脂酰乙醇胺、四种未鉴定的胺脂和两种未鉴定的磷脂。基于表型特征、化学分类特征和系统发育推断,菌株 1E403 代表属的一个新种,我们建议命名为 sp. nov.。新种的模式菌株为 1E403(=KCTC 62960=MCCC 1H00356)。

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