Department of Microbiology and Immunology, University of Minnesota Medical School, Minneapolis, MN USA.
NPJ Biofilms Microbiomes. 2019 Sep 19;5(1):23. doi: 10.1038/s41522-019-0099-0. eCollection 2019.
is a commensal organism as well as an important nosocomial pathogen, and its infections are typically linked to biofilm formation. Nearly 25% of the OG1RF genome encodes hypothetical genes or genes of unknown function. Elucidating their function and how these gene products influence biofilm formation is critical for understanding biology. To identify uncharacterized early biofilm determinants, we performed a genetic screen using an arrayed transposon (Tn) library containing ~2000 mutants in hypothetical genes/intergenic regions and identified eight uncharacterized predicted protein-coding genes required for biofilm formation. We demonstrate that OG1RF_10435 encodes a phosphatase that modulates global protein expression and arginine catabolism and propose renaming this gene (biofilm phosphatase). We present a workflow for combining phenotype-driven experimental and computational evaluation of hypothetical gene products in , which can be used to study hypothetical genes required for biofilm formation and other phenotypes of diverse bacteria.
是一种共生菌,也是一种重要的医院获得性病原体,其感染通常与生物膜形成有关。OG1RF 基因组的近 25%编码假设基因或未知功能的基因。阐明它们的功能以及这些基因产物如何影响生物膜形成对于理解生物学至关重要。为了鉴定未表征的早期生物膜决定因素,我们使用包含约 2000 个突变体的基因间区和假设基因的排列转座子 (Tn) 文库进行了遗传筛选,鉴定出了 8 个未表征的预测蛋白编码基因,这些基因对于生物膜形成是必需的。我们证明 OG1RF_10435 编码一种磷酸酶,可调节全局蛋白表达和精氨酸分解代谢,并提议重新命名该基因(生物膜磷酸酶)。我们提出了一种工作流程,用于组合表型驱动的实验和计算评估,以研究生物膜形成和其他不同细菌表型所需的假设基因产物。