Ilseong Landscaping Co., Ltd., Jeju, 63242, Republic of Korea.
Faculty of Science Education, Jeju National University, Jeju, 63243, Republic of Korea.
J Microbiol. 2019 Dec;57(12):1048-1055. doi: 10.1007/s12275-019-9260-y. Epub 2019 Sep 25.
A Gram-stain-negative strictly aerobic, marine bacterium, designated GH2-2, was isolated from a rhizosphere mudflat of a halophyte (Carex scabrifolia) in Gangwha Island, the Republic of Korea. The cells of the organism were oxidase-positive, catalase-positive, flagellated, short rods that grew at 10-40°C, pH 4-10, and 0-13% (w/v) NaCl. The predominant ubiquinone was Q-10. The major polar lipids were phosphatidylcholine, phosphatidylethanolamine, and phosphatidylglycerol. The major fatty acid is C. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the novel isolate formed an independent lineage at the base of the radiation encompassing members of the genus Thioclava, except for Thioclava arenosa. The closest relatives were T. nitratireducens (96.03% sequence similarity) and T. dalianensis (95.97%). The genome size and DNA G+C content were 3.77 Mbp and 59.6 mol%, respectively. Phylogenomic analysis supported phylogenetic distinctness based on 16S rRNA gene sequences. Average nucleotide identity values were 73.6-74.0% between the novel strain and members of the genus Thioclava. On the basis of data obtained from a polyphasic approach, the strain GH2-2 (= KCTC 62124 = DSM 105743) represents a novel species of a new genus for which the name Hahyoungchilella caricis gen. nov., sp. nov. is proposed. Moreover, the transfer of Thioclava arenosa Thongphrom et al. 2017 to Pseudothioclava gen. nov. as Pseudothioclava arenosa comb. nov. is also proposed. Finally, Thioclava electrotropha Chang et al. 2018 is proposed to be a later heterosynonym of Thioclava sediminum Liu et al. 2017.
一株革兰氏阴性严格需氧海洋细菌,命名为 GH2-2,从韩国 Gangwha 岛盐生植物(獐毛)根际泥滩中分离得到。该菌细胞呈氧化酶阳性、过氧化氢酶阳性、有鞭毛、短杆状,在 10-40°C、pH4-10 和 0-13%(w/v)NaCl 条件下生长。主要的醌类为 Q-10。主要的极性脂类为磷脂酰胆碱、磷脂酰乙醇胺和磷脂酰甘油。主要脂肪酸为 C16:0。基于 16S rRNA 基因序列的系统发育分析表明,该新分离株形成了一个独立的谱系,位于包含 Thioclava 属成员的辐射分支的底部,除了 Thioclava arenosa 之外。最接近的亲缘关系是 T. nitratireducens(96.03%序列相似性)和 T. dalianensis(95.97%)。基因组大小和 DNA G+C 含量分别为 3.77 Mbp 和 59.6 mol%。基因组系统发育分析支持基于 16S rRNA 基因序列的系统发育差异。新型菌株与 Thioclava 属成员之间的平均核苷酸同一性值为 73.6-74.0%。基于多相方法获得的数据,菌株 GH2-2(=KCTC 62124=DSM 105743)代表一个新属的新种,建议采用新属名 Hahyoungchilella caricis gen. nov.,sp. nov.。此外,还建议将 Thongphrom 等人 2017 年命名的 Thioclava arenosa 转移到 Pseudothioclava 属中,作为 Pseudothioclava arenosa comb. nov.。最后,还建议将 Chang 等人 2018 年命名的 Thioclava electrotropha 作为 Thioclava sediminum Liu 等人 2017 年的异名。