Berlingeri Manuela, Devoto Francantonio, Gasparini Francesca, Saibene Aurora, Corchs Silvia E, Clemente Lucia, Danelli Laura, Gallucci Marcello, Borgoni Riccardo, Borghese Nunzio Alberto, Paulesu Eraldo
DISTUM, Department of Humanistic Studies, University of Urbino Carlo Bo, Urbino, Italy.
NeuroMI, Milan Centre for Neuroscience, Milan, Italy.
Front Neurosci. 2019 Oct 22;13:1037. doi: 10.3389/fnins.2019.01037. eCollection 2019.
In this paper we describe and validate a new coordinate-based method for meta-analysis of neuroimaging data based on an optimized hierarchical clustering algorithm: CluB (Clustering the Brain). The CluB toolbox permits both to extract a set of spatially coherent clusters of activations from a database of stereotactic coordinates, and to explore each single cluster of activation for its composition according to the cognitive dimensions of interest. This last step, called "cluster composition analysis," permits to explore neurocognitive effects by adopting a factorial-design logic and by testing the working hypotheses using either asymptotic tests, or exact tests either in a classic inference, or in a Bayesian-like context. To perform our validation study, we selected the fMRI data from 24 normal controls involved in a reading task. We run a standard random-effects second level group analysis to obtain a "Gold Standard" of reference. In a second step, the subject-specific reading effects (i.e., the linear t-contrast "reading > baseline") were extracted to obtain a coordinates-based database that was used to run a meta-analysis using both CluB and the popular Activation Likelihood Estimation method implemented in the software GingerALE. The results of the two meta-analyses were compared against the "Gold Standard" to compute performance measures, i.e., sensitivity, specificity, and accuracy. The GingerALE method obtained a high level of accuracy (0.967) associated with a high sensitivity (0.728) and specificity (0.971). The CluB method obtained a similar level of accuracy (0.956) and specificity (0.969), notwithstanding a lower level of sensitivity (0.14) due to the lack of prior Gaussian transformation of the data. Finally, the two methods obtained a good-level of concordance (AC = 0.93). These results suggested that methods based on hierarchical clustering (and statistics) and methods requiring prior Gaussian transformation of the data can be used as complementary tools, with the GingerALE method being optimal for neurofunctional mapping of pooled data according to simpler designs, and the CluB method being preferable to test more specific, and localized, neurocognitive hypotheses according to factorial designs.
在本文中,我们描述并验证了一种基于优化层次聚类算法的神经影像数据荟萃分析新的基于坐标的方法:CluB(大脑聚类)。CluB工具箱既允许从立体定向坐标数据库中提取一组空间连贯的激活簇,又能根据感兴趣的认知维度探索每个单独的激活簇的组成。这最后一步,即“簇组成分析”,允许通过采用析因设计逻辑并使用渐近检验或精确检验在经典推断或类似贝叶斯的背景下检验工作假设来探索神经认知效应。为了进行我们的验证研究,我们从参与阅读任务的24名正常对照中选择了功能磁共振成像(fMRI)数据。我们进行了标准的随机效应二级组分析以获得一个“金标准”参考。在第二步中,提取个体特异性阅读效应(即线性t对比“阅读>基线”)以获得一个基于坐标的数据库,该数据库用于使用CluB和软件GingerALE中实现的流行的激活似然估计方法进行荟萃分析。将两种荟萃分析的结果与“金标准”进行比较以计算性能指标,即敏感性、特异性和准确性。GingerALE方法获得了与高敏感性(0.728)和特异性(0.971)相关的高水平准确性(0.967)。尽管由于数据缺乏先验高斯变换导致敏感性水平较低(0.14),CluB方法仍获得了类似水平的准确性(0.956)和特异性(0.969)。最后,两种方法获得了良好水平的一致性(AC = 0.93)。这些结果表明,基于层次聚类(和统计)的方法以及需要数据先验高斯变换的方法可以用作互补工具,GingerALE方法对于根据更简单设计的汇总数据的神经功能映射是最优的,而CluB方法更适合根据析因设计检验更具体、更局部的神经认知假设。