Merla Cristina, Rodrigues Carla, Passet Virginie, Corbella Marta, Thorpe Harry A, Kallonen Teemu V S, Zong Zhiyong, Marone Piero, Bandi Claudio, Sassera Davide, Corander Jukka, Feil Edward J, Brisse Sylvain
Fondazione IRCCS Policlinico San Matteo, Unità Operativa Complessa Microbiologia e Virologia, Pavia, Italy.
Scuola di Specializzazione in Microbiologia e Virologia, Università degli Studi di Pavia, Pavia, Italy.
Front Microbiol. 2019 Oct 25;10:2360. doi: 10.3389/fmicb.2019.02360. eCollection 2019.
causes opportunistic human infections and post-antibiotic haemorrhagic diarrhea. This species is genetically heterogeneous and is currently subdivided into seven phylogroups (Ko1 to Ko4 and Ko6 to Ko8). Here we investigated the taxonomic status of phylogroups Ko3 and Ko4. Genomic sequence-based phylogenetic analyses demonstrate that Ko3 and Ko4 formed well-defined sequence clusters related to, but distinct from, (Ko1), (Ko2), (Ko8), and (Ko6). The average nucleotide identity (ANI) of Ko3 and Ko4 were 90.7% with and 95.5% with , respectively. In addition, three strains of , a species so far described based on a single strain from a urinary tract infection patient in China, were isolated from cattle and human feces. Biochemical and MALDI-ToF mass spectrometry analysis allowed differentiating Ko3, Ko4, and Ko8 from the other species. Based on these results, we propose the names for the Ko3 phylogroup, with SPARK_775_C1 (CIP 111695 and DSM 109531) as type strain, and for Ko4, with SPARK_836_C1 (CIP 111696 and DSM 109530) as type strain. Strains of were isolated from human urine, cow feces, and farm surfaces, while strains of were found in fecal carriage from humans, cows, and turtles.
可引发人类机会性感染及抗生素相关性出血性腹泻。该物种在基因上具有异质性,目前被细分为七个系统发育群(Ko1至Ko4以及Ko6至Ko8)。在此,我们研究了系统发育群Ko3和Ko4的分类地位。基于基因组序列的系统发育分析表明,Ko3和Ko4形成了明确的序列簇,与Ko1、Ko2、Ko8和Ko6相关,但又有所不同。Ko3和Ko4与Ko1的平均核苷酸同一性(ANI)分别为90.7%,与Ko2的平均核苷酸同一性为95.5%。此外,从牛和人类粪便中分离出了三株中国的菌株,该物种迄今仅基于一名尿路感染患者的单一菌株进行过描述。生化和基质辅助激光解吸电离飞行时间质谱分析能够将Ko3、Ko4和Ko8与其他物种区分开来。基于这些结果,我们提议将Ko3系统发育群命名为,以SPARK_775_C1(CIP 111695和DSM 109531)作为模式菌株;将Ko4命名为,以SPARK_836_C1(CIP 111696和DSM 109530)作为模式菌株。的菌株从人类尿液、牛粪和农场表面分离得到,而的菌株则在人类、牛和龟的粪便携带中被发现。