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在连续和分布双重磷酸化循环中存在 Hopf 分支。

On the existence of Hopf bifurcations in the sequential and distributive double phosphorylation cycle.

机构信息

Life Science Engineering, HTW Berlin, Wilhelminenhoftstr. 75, 10459 Berlin, Germany.

Department of Mathematical Sciences, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark.

出版信息

Math Biosci Eng. 2019 Oct 17;17(1):494-513. doi: 10.3934/mbe.2020027.

Abstract

Protein phosphorylation cycles are important mechanisms of the post translational modification of a protein and as such an integral part of intracellular signaling and control. We consider the sequential phosphorylation and dephosphorylation of a protein at two binding sites. While it is known that proteins where phosphorylation is processive and dephosphorylation is distributive admit oscillations (for some value of the rate constants and total concentrations) it is not known whether or not this is the case if both phosphorylation and dephosphorylation are distributive. We study simplified mass action models of sequential and distributive phosphorylation and show that for each of those there do not exist rate constants and total concentrations where a Hopf bifurcation occurs. To arrive at this result we use convex parameters to parametrize the steady state and Hurwitz matrices.

摘要

蛋白质磷酸化循环是蛋白质翻译后修饰的重要机制,也是细胞内信号转导和调控的组成部分。我们考虑在两个结合位点上对蛋白质进行顺序磷酸化和去磷酸化。虽然已知磷酸化是连续的,去磷酸化是分布的蛋白质会产生振荡(对于某些速率常数和总浓度值),但是如果磷酸化和去磷酸化都是分布的,是否会出现这种情况尚不清楚。我们研究了顺序和分布磷酸化的简化质量作用模型,并表明对于这两种情况,不存在发生Hopf 分岔的速率常数和总浓度。为了得到这个结果,我们使用凸参数来参数化稳态和 Hurwitz 矩阵。

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