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洞察紫色杆菌(S)选择性胺转氨酶的二聚体解离过程。

Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase.

机构信息

Department of Industrial Biotechnology, KTH Royal Institute of Technology, AlbaNova University Center, SE-106 91, Stockholm, Sweden.

SARomics Biostructures AB, Medicon Village, SE-223 81, Lund, Sweden.

出版信息

Sci Rep. 2019 Nov 18;9(1):16946. doi: 10.1038/s41598-019-53177-3.

Abstract

One of the main factors hampering the implementation in industry of transaminase-based processes for the synthesis of enantiopure amines is their often low storage and operational stability. Our still limited understanding of the inactivation processes undermining the stability of wild-type transaminases represents an obstacle to improving their stability through enzyme engineering. In this paper we present a model describing the inactivation process of the well-characterized (S)-selective amine transaminase from Chromobacterium violaceum. The cornerstone of the model, supported by structural, computational, mutagenesis and biophysical data, is the central role of the catalytic lysine as a conformational switch. Upon breakage of the lysine-PLP Schiff base, the strain associated with the catalytically active lysine conformation is dissipated in a slow relaxation process capable of triggering the known structural rearrangements occurring in the holo-to-apo transition and ultimately promoting dimer dissociation. Due to the occurrence in the literature of similar PLP-dependent inactivation models valid for other non-transaminase enzymes belonging to the same fold-class, the role of the catalytic lysine as conformational switch might extend beyond the transaminase enzyme group and offer new insight to drive future non-trivial engineering strategies.

摘要

阻碍转氨酶法在工业上用于合成对映纯胺的主要因素之一是它们的储存和操作稳定性往往较低。我们对破坏野生型转氨酶稳定性的失活过程的理解仍然有限,这代表了通过酶工程提高其稳定性的一个障碍。在本文中,我们提出了一个模型,描述了来自紫色色杆菌的(S)选择性胺转氨酶的失活过程。该模型的基石是由结构、计算、突变和生物物理数据支持的催化赖氨酸作为构象开关的核心作用。在赖氨酸-PLP 希夫碱断裂后,与催化活性赖氨酸构象相关的张力在缓慢弛豫过程中消散,该过程能够引发在全酶到脱辅基酶的转变中发生的已知结构重排,并最终促进二聚体解离。由于文献中存在类似的、适用于属于同一折叠类的其他非转氨酶酶的依赖于 PLP 的失活模型,因此催化赖氨酸作为构象开关的作用可能超出转氨酶酶组,并为推动未来的非平凡工程策略提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7437/6861513/f3ad62aee65d/41598_2019_53177_Fig1_HTML.jpg

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