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环状二芳基庚烷类化合物的合成、生物评价及作为潜在抗癌治疗剂的分子对接研究。

Synthesis, Biological Evaluation and Molecular Docking Study of Cyclic Diarylheptanoids as Potential Anticancer Therapeutics.

机构信息

College of Pharmacy, Yeungnam University, Gyeongsan 38541, Korea.

Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.

出版信息

Anticancer Agents Med Chem. 2020;20(4):464-475. doi: 10.2174/1871520619666191125130237.

Abstract

BACKGROUND

Cancer is one of the leading causes of mortality globally. To cope with cancer, it is necessary to develop anticancer drugs. Bioactive natural products, i.e. diarylheptanoids, have gained significant attention of researchers owing to their intriguing structures and potent biological activities. In this article, considering the development of anticancer drugs with enhanced selectivity towards cancerous cells, a series of Cyclic Diarylheptanoids (CDHs) are designed, synthesized and evaluated their biological activity.

OBJECTIVE

To establish an easy route for the synthesis of diarylheptanoids, and evaluate their antiproliferative, and topoisomerase-I & -IIα inhibitory activities, for developing potential anticancer drugs among CDHs.

METHODS

Diarylheptanoids were synthesized from reported linear diarylheptanoids using the classical Ullmann reaction. Antibacterial activity was evaluated by the filter paper disc diffusion method. Cell viability was assessed by measuring mitochondrial dehydrogenase activity with a Cell Counting Kit (CCK-8). Topoisomerases I and II (topo-I and -IIα) inhibitory activity was measured by the assessment of relaxation of supercoiled pBR322 plasmid DNA. IFD protocol of Schrodinger Maestro v11.1 was used to characterize the binding pattern of studied compounds with the ATPase domain of the human topo-IIα.

RESULTS

The synthesized CDHs were evaluated for their biological activities (antibacterial, antiproliferative, and topoisomerase-I & -IIα inhibitory activities, respectively). Leading to obtain a series of anticancer agents with the least inhibitory activities against different microbes, improving their selectivity for cancer cells. In brief, most of the synthesized CDHs had excellent antiproliferative activity against T47D (human breast cancer cell line). Pterocarine possessed the strongest activity (2i; IC50 = 0.63µM) against T47D. The cyclic diarylheptanoid 2b induced 30% inhibition of topoisomerase-IIα activity at 100μM compared with the reference of etoposide, which induced 72% inhibition. Among the tested compounds, galeon (2h) displayed very low activity against four bacterial strains. Compounds 2b, 2h, and 2i formed hydrogen bonds with Thr215, Asn91, Asn120, Ala167, Lys168 and Ile141 residues, which are important for binding of ligand compound to the ATPase binding site of topoisomerase IIα by acting as ATP competitive molecule validated by docking study. In silico Absorption, Distribution, Metabolism and Excretion (ADME) analysis revealed the predicted ADME parameters of the studied compounds which showed recommended values.

CONCLUSION

A series of CDHs were synthesized and evaluated for their antibacterial, antiproliferative, and topo-I & -IIα inhibitory activities. SARs study, molecular docking study and in silico ADME analysis were conducted. Five compounds exhibited excellent and selective antiproliferative activity against the human breast cancer cell line (T47D). Among them, a compound 2h showed topo-IIα activity by 30% at 100µM, which represented a moderate intensity of inhibition compared with etoposide. Three of them formed hydrogen bonds with Thr215, Asn91, Asn120, and Ala167 residues, which are considered as crucial residues for binding to the ATPase domain of topoisomerase IIα. According to in silico drug-likeness property analysis, three compounds are expected to show superiority over etoposide in case of absorption, distribution, metabolism and excretion.

摘要

背景

癌症是全球主要的死亡原因之一。为了应对癌症,有必要开发抗癌药物。生物活性天然产物,即二芳基庚烷类,由于其有趣的结构和强大的生物活性,引起了研究人员的极大关注。在本文中,考虑到开发对癌细胞具有更高选择性的抗癌药物,设计、合成了一系列环状二芳基庚烷(CDHs),并评价了它们的生物活性。

目的

建立二芳基庚烷类化合物的合成方法,评价其对增殖和拓扑异构酶 I 和 IIα 的抑制活性,为开发潜在的抗癌药物。

方法

用经典的乌尔曼反应从报道的线性二芳基庚烷合成二芳基庚烷。用滤纸片扩散法评价抗菌活性。用细胞计数试剂盒(CCK-8)测定线粒体脱氢酶活性评估细胞活力。通过评估超螺旋 pBR322 质粒 DNA 的松弛来测量拓扑异构酶 I 和 II(topo-I 和 -IIα)的抑制活性。用施罗德尔 Maestro v11.1 的 IFD 方案来描述研究化合物与人类拓扑异构酶 IIα 的 ATP 酶结构域的结合模式。

结果

对合成的 CDHs 进行了生物活性评价(抗菌、增殖抑制和拓扑异构酶 I 和 IIα 抑制活性)。获得了一系列对不同微生物抑制活性最低的抗癌药物,提高了它们对癌细胞的选择性。简而言之,大多数合成的 CDHs 对 T47D(人乳腺癌细胞系)具有很强的增殖抑制活性。普卡林(2i)对 T47D 的抑制活性最强(IC50=0.63µM)。与依托泊苷(诱导 72%抑制)相比,环状二芳基庚烷 2b 在 100μM 时诱导拓扑异构酶 IIα 活性抑制 30%。在所测试的化合物中,galeon(2h)对四种细菌株的活性非常低。化合物 2b、2h 和 2i 与 Thr215、Asn91、Asn120、Ala167、Lys168 和 Ile141 残基形成氢键,这些残基对配体化合物与拓扑异构酶 IIα 的 ATP 结合位点的结合很重要,这通过对接研究得到了验证。基于计算机的吸收、分布、代谢和排泄(ADME)分析揭示了研究化合物的预测 ADME 参数,这些参数显示了推荐值。

结论

合成了一系列 CDHs,并对其进行了抗菌、增殖抑制和 topo-I 和 IIα 抑制活性评价。进行了 SAR 研究、分子对接研究和基于计算机的 ADME 分析。五种化合物对人乳腺癌细胞系(T47D)表现出良好的选择性增殖抑制活性。其中,化合物 2h 在 100µM 时对 topo-IIα 的活性抑制率为 30%,与依托泊苷相比,抑制强度中等。其中三种化合物与 Thr215、Asn91、Asn120 和 Ala167 残基形成氢键,这些残基被认为是与拓扑异构酶 IIα 的 ATP 酶结构域结合的关键残基。根据基于计算机的药物相似性特性分析,三种化合物在吸收、分布、代谢和排泄方面有望优于依托泊苷。

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