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朝鲜半岛特有濒危物种——山溪鲵的遗传与系统发育结构。

Genetic and phylogenetic structure of Hynobius quelpaertensis, an endangered endemic salamander species on the Korean Peninsula.

机构信息

Department of Life Sciences, Yeungnam University, 280 Daehak-ro, Gyeongsan, 38541, Gyeongsangbuk-do, South Korea.

Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University, Seoul, 08826, South Korea.

出版信息

Genes Genomics. 2020 Feb;42(2):165-178. doi: 10.1007/s13258-019-00886-8. Epub 2019 Dec 3.

Abstract

BACKGROUND

The Korean Peninsula is a small but unique area showing great endemic Hynobius diversity with H. quelpaertensis, H. yangi, H. unisacculus and three species candidates (HC1, HC3 and HC4). H. quelpaertensis is distributed in the southern part and in Jeju Island, while the remaining species have extremely narrow distributions.

OBJECTIVES

To examine the genetic structure of H. quelpaertensis and the phylogenetic placement in Hynobius.

METHODS

Three mitochondrial and six microsatellite loci were genotyped for 204 Hynobius quelpaertensis, three H. leechii, three H. yangi, three HC1, two H. unisacculus, three HC3, three HC4 and ten Japanses H. lichenatus.

RESULTS

A high level of mitochondrial diversity was found in H. quelpaertensis. Our mitochondrial data showed evidence of a historical link between inland and Jeju Island despite the signature of founder effect likely experienced by the early island populations. However, our microsatellite analysis showed the fairly clear signature of isolation history between in- and island populations. Upon phylogenetic analysis, H. quelpaertensis, H. unisacculus and HC1 formed a cluster, whereas H. yangi belonged to a separate cluster. HC3 and HC4 were clustered with either H. quelpaertensis or H. yangi depending on the locus used.

CONCLUSION

Our results show at least partially the historical imprints engraved by dispersal of Korean endemic Hynobius during Pleistocene, potentially providing a fundamental basis in determining the conservation units and finding management strategies for these species.

摘要

背景

朝鲜半岛是一个小而独特的地区,拥有丰富的特有虎纹蛙多样性,包括 H. quelpaertensis、H. yangi、H. unisacculus 和三个候选物种(HC1、HC3 和 HC4)。H. quelpaertensis 分布在南部和济州岛,而其余物种的分布范围极窄。

目的

研究 H. quelpaertensis 的遗传结构及其在虎纹蛙属中的系统发育位置。

方法

对 204 只 H. quelpaertensis、3 只 H. leechii、3 只 H. yangi、3 只 HC1、2 只 H. unisacculus、3 只 HC3、3 只 HC4 和 10 只日本虎纹蛙进行了线粒体和 6 个微卫星基因座的基因型分析。

结果

H. quelpaertensis 具有高水平的线粒体多样性。我们的线粒体数据表明,尽管早期岛屿种群可能经历了奠基者效应,但内陆和济州岛之间存在着历史联系的证据。然而,我们的微卫星分析显示,岛内和岛外种群之间存在着相当明显的隔离历史特征。在系统发育分析中,H. quelpaertensis、H. unisacculus 和 HC1 形成一个聚类,而 H. yangi 则属于一个单独的聚类。HC3 和 HC4 根据所使用的基因座,与 H. quelpaertensis 或 H. yangi 聚类。

结论

我们的研究结果至少部分显示了虎纹蛙属在更新世期间扩散所留下的历史印记,这可能为确定这些物种的保护单位和寻找管理策略提供了一个基本的基础。

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