Jiu Songtao, Xu Yan, Wang Jiyuan, Wang Lei, Wang Shiping, Ma Chao, Guan Le, Abdullah Muhammad, Zhao Maoxiang, Xu Wenping, Ma Wenli, Zhang Caixi
Department of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
Key Laboratory of Genetics and Fruit Development, College of Horticulture, Nanjing Agricultural University, Nanjing, China.
Front Genet. 2019 Dec 20;10:1276. doi: 10.3389/fgene.2019.01276. eCollection 2019.
The TEOSINTE BRANCHED 1/CYCLOIDEA/PROLIFERATING CELL FACTORS (TCP) protein, belonging to a plant-specific transcription factors (TFs) family, participates in the control of plant growth and development by regulating cell proliferation. Until now, a comprehensive study of concerning the TCP gene family and their roles in grapevine ( L.) has not been completed. Using bioinformatics approaches, 17 genes were identified and further classified into two classes, designated class I (PCF subclass) and class II (CIN and CYC/TB1 subclass), which was further supported by exon-intron organizations and conserved motif analysis. Promoter analysis demonstrated that have numerous -acting elements related to plant growth and development, phytohormone, and abiotic/biotic stress responses. The singleton duplication of grapevine genes contributed to this gene family expansion. The syntenic analyses among , , and showed that these genes located in corresponding syntenic blocks arose before the divergence of , , and . The expression levels of 17 were determined in different tissues and fruit developmental stages, and abscisic acid (ABA) treatment. Seventeen exhibited distinct tissue-specific expression patterns, potentially illustrating the functional divergence of in all tested tissues. Eleven were down-regulated in five berry developmental stages, while three were up-regulated. Additionally, many members were strongly modulated by ABA treatment, suggesting these have important and diverse regulatory roles in ABA treatment. Our results provide valuable information on the evolution and functions of the , pave the way for further functional verification of these in grapevine.
玉米分枝1/类周期蛋白/增殖细胞因子(TCP)蛋白属于植物特有的转录因子(TFs)家族,通过调节细胞增殖参与植物生长发育的调控。到目前为止,关于葡萄(Vitis vinifera L.)TCP基因家族及其作用的全面研究尚未完成。利用生物信息学方法,鉴定出17个基因,并进一步分为两类,即I类(PCF亚类)和II类(CIN和CYC/TB1亚类),外显子-内含子结构和保守基序分析进一步支持了这一分类。启动子分析表明,这些基因具有许多与植物生长发育、植物激素以及非生物/生物胁迫响应相关的顺式作用元件。葡萄TCP基因的单拷贝复制促成了该基因家族的扩张。葡萄、拟南芥和水稻之间的共线性分析表明,位于相应共线性区域的这些基因在葡萄、拟南芥和水稻分化之前就已出现。测定了17个TCP基因在不同组织、果实发育阶段以及脱落酸(ABA)处理下的表达水平。17个TCP基因表现出明显的组织特异性表达模式,这可能说明了TCP基因在所有测试组织中的功能差异。在五个浆果发育阶段,11个TCP基因表达下调,而3个TCP基因表达上调。此外,许多成员受到ABA处理的强烈调控,表明这些TCP基因在ABA处理中具有重要且多样的调控作用。我们的研究结果为葡萄TCP基因的进化和功能提供了有价值的信息,为进一步在葡萄中对这些基因进行功能验证铺平了道路。