Department of Urology, University of Texas MD Anderson Cancer Center, Houston, Texas.
Department of Urology, University of California San Francisco, San Francisco, California.
Mol Cancer Res. 2020 Jun;18(6):811-821. doi: 10.1158/1541-7786.MCR-19-0766. Epub 2020 Mar 2.
Little is known regarding the subclone evolution process in advanced bladder cancer, particularly with respect to the genomic alterations that lead to the development of metastatic lesions. In this project, we identify gene expression signatures associated with metastatic bladder cancer through mRNA expression profiling of RNA isolated from 33 primary bladder cancer and corresponding lymph node (LN) metastasis samples. Gene expression profiling (GEP) was performed on RNA isolated using the Illumina DASL platform. We identified the developmental transcription factor TCF21 as being significantly higher in primary bladder cancer compared with LN metastasis samples. To elucidate its function in bladder cancer, loss- and gain-of-function experiments were conducted in bladder cancer cell lines with high and low expression of TCF21, respectively. We also performed GEP in bladder cancer cell lines following TCF21 overexpression. We identified 2,390 genes differentially expressed in primary bladder cancer and corresponding LN metastasis pairs at an FDR cutoff of 0.1 and a fold change of 1. Among those significantly altered, expression of TCF21 was higher in the primary tumor compared with LN metastasis. We validated this finding with qPCR and IHC on patient samples. Moreover, TCF21 expression was higher in luminal cell lines and knockdown of TCF21 increased invasion, tumor cell dissemination, and metastasis. In contrast, overexpression of TCF21 in highly metastatic basal bladder cancer cell lines decreased their invasive and metastatic potential. IMPLICATIONS: TCF21 is differentially overexpressed in primary bladder cancer compared with matched LN metastasis, with and studies demonstrating a metastasis suppressor function of this transcription factor.
关于晚期膀胱癌亚克隆进化过程的知识甚少,特别是在导致转移性病变的基因组改变方面。在这个项目中,我们通过对 33 个原发性膀胱癌和相应的淋巴结(LN)转移样本中分离的 RNA 进行 mRNA 表达谱分析,确定与转移性膀胱癌相关的基因表达特征。基因表达谱分析(GEP)是使用 Illumina DASL 平台对 RNA 进行分离后进行的。我们发现发育转录因子 TCF21 在原发性膀胱癌中明显高于 LN 转移样本。为了阐明其在膀胱癌中的功能,我们分别在 TCF21 高表达和低表达的膀胱癌细胞系中进行了缺失和功能获得实验。我们还在 TCF21 过表达后对膀胱癌细胞系进行了 GEP。我们在 FDR 截止值为 0.1 和倍数变化为 1 的情况下,在原发性膀胱癌和相应的 LN 转移对中鉴定出 2390 个差异表达的基因。在那些显著改变的基因中,TCF21 在原发性肿瘤中的表达高于 LN 转移。我们通过对患者样本进行 qPCR 和 IHC 验证了这一发现。此外,在腔细胞系中 TCF21 的表达更高,而 TCF21 的敲低则增加了侵袭、肿瘤细胞扩散和转移。相比之下,在高转移性基底膀胱癌细胞系中过表达 TCF21 则降低了它们的侵袭和转移潜力。意义:与匹配的 LN 转移相比,TCF21 在原发性膀胱癌中差异过表达,和 研究表明该转录因子具有转移抑制功能。