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Gln596 在精细调节哺乳动物 ALOX15 特异性、蛋白稳定性和变构特性中的作用。

A role of Gln596 in fine-tuning mammalian ALOX15 specificity, protein stability and allosteric properties.

机构信息

Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain.

Department of Experimental Medicine, University of Tor Vergata, Via Montpellier 1, 00133 Rome, Italy.

出版信息

Biochim Biophys Acta Mol Cell Biol Lipids. 2020 Jul;1865(7):158680. doi: 10.1016/j.bbalip.2020.158680. Epub 2020 Mar 6.

Abstract

His596 of human ALOX12 has been suggested to interact with the COO-group of arachidonic acid during ALOX catalysis. In mammalian ALOX15 orthologs Gln596 occupies this position and this amino acid exchange might contribute to the functional differences between the two ALOX-isoforms. To explore the role of Gln596 for ALOX15 functionality we mutated this amino acid to different residues in rabbit and human ALOX15 and investigated the impact of these mutations on structural, catalytic and allosteric enzyme properties. To shed light on the molecular basis of the observed functional alterations we performed in silico substrate docking studies and molecular dynamics simulations and also explored the impact of Gln596 exchange on the protein structure. The combined theoretical and experimental data suggest that Gln596 may not directly interact with the COO-group of arachidonic acid. In contrast, mutations at Gln596 destabilize the secondary and tertiary structure of ALOX15 orthologs, which may be related to a disturbance of the electrostatic interaction network with other amino acids in the immediate surrounding. Moreover, our MD-simulations suggest that the geometry of the dimer interface depends on the structure of substrate bound inside the substrate-binding pocket and that Gln596Ala exchange impairs the allosteric properties of the enzyme. Taken together, these data indicate the structural and functional importance of Gln596 for ALOX15 catalysis.

摘要

人类 ALOX12 的 His596 被认为在 ALOX 催化过程中与花生四烯酸的 COO 基团相互作用。在哺乳动物 ALOX15 同源物中,Gln596 占据了这个位置,这种氨基酸交换可能导致两种 ALOX 同工酶之间的功能差异。为了探索 Gln596 对 ALOX15 功能的作用,我们在兔和人 ALOX15 中将该氨基酸突变为不同的残基,并研究了这些突变对结构、催化和别构酶性质的影响。为了阐明观察到的功能改变的分子基础,我们进行了计算机模拟底物对接研究和分子动力学模拟,并探讨了 Gln596 交换对蛋白质结构的影响。综合理论和实验数据表明,Gln596 可能不会直接与花生四烯酸的 COO 基团相互作用。相反,Gln596 突变会使 ALOX15 同源物的二级和三级结构不稳定,这可能与周围其他氨基酸的静电相互作用网络的干扰有关。此外,我们的 MD 模拟表明,二聚体界面的几何形状取决于底物结合口袋内结合的底物的结构,并且 Gln596Ala 交换会损害酶的别构性质。总之,这些数据表明 Gln596 对 ALOX15 催化具有结构和功能上的重要性。

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