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孟加拉国临床感染中高成功率肺炎克雷伯菌 15 型序列型的移动多粘菌素耐药性的出现。

Emergence of Mobile Colistin Resistance () in a Highly Successful Klebsiella pneumoniae Sequence Type 15 Clone from Clinical Infections in Bangladesh.

机构信息

Department of Medical Microbiology, Institute of Infection and Immunity, School of Medicine, Cardiff University, Cardiff, United Kingdom

Public Health Wales Microbiology, University Hospital of Wales, Cardiff, United Kingdom.

出版信息

mSphere. 2020 Mar 11;5(2):e00023-20. doi: 10.1128/mSphere.00023-20.

Abstract

The emergence of mobilized colistin resistance genes () has become a serious concern in clinical practice, compromising treatment options for life-threatening infections. In this study, colistin-resistant harboring was recovered from infected patients in the largest public hospital of Bangladesh, with a prevalence of 0.3% (3/1,097). We found in an identical highly stable multidrug-resistant IncFIB(pQil) plasmid of ∼113 kb, which belonged to an epidemiologically successful clone, ST15. The resistance mechanism was proven to be horizontally transferable, which incurred a fitness cost to the host. The core genome phylogeny suggested the clonal spread of in a Bangladeshi hospital. Core genome single-nucleotide polymorphisms among the -positive isolates ranged from 23 to 110. It has been hypothesized that was inserted into IncFIB(pQil) with preexisting resistance loci, and , by IS Coincidentally, all resistance determinants in the plasmid [, , , , , , ] were bracketed by IS, demonstrating the possibility of intra- and interspecies and intra- and intergenus transposition of entire resistance loci. This is the first report of an -like mechanism from human infections in Bangladesh. However, given the acquisition of by a sable conjugative plasmid in a successful high-risk clone of ST15, there is a serious risk of dissemination of in Bangladesh from 2017 onwards. There is a marked paucity in our understanding of the epidemiology of colistin-resistant bacterial pathogens in South Asia. A report by Davies and Walsh (Lancet Infect Dis 18:256-257, https://doi.org/10.1016/S1473-3099(18)30072-0, 2018) suggests the export of colistin from China to India, Vietnam, and South Korea in 2016 was approximately 1,000 tons and mainly used as a poultry feed additive. A few reports forecast that the prevalence of in humans and livestock will increase in South Asia. Given the high prevalence of and in India, Bangladesh, and Pakistan, colistin has become the invariable option for the management of serious infections, leading to the emergence of -like mechanisms in South Asia. Systematic scrutiny of the prevalence and transmission of variants in South Asia is vital to understanding the drivers of genes and to initiate interventions to overcome colistin resistance.

摘要

黏菌素耐药基因的出现()已成为临床实践中的严重问题,危及危及生命感染的治疗选择。在这项研究中,从孟加拉国最大的公立医院感染患者中回收了携带的耐黏菌素,其流行率为 0.3%(1097 例中的 3 例)。我们发现了一个高度稳定的多药耐药性 IncFIB(pQil)质粒,约 113kb 长,属于一个成功的流行克隆,ST15。抗性机制被证明是可以水平转移的,这给宿主带来了适应度成本。核心基因组系统发育树表明,克隆在孟加拉国医院中传播。阳性分离株之间的核心基因组单核苷酸多态性范围为 23 至 110。据推测,通过插入到 IncFIB(pQil)中,在先前存在的抗性基因座和中引入了,而,通过巧合的是,质粒中的所有抗性决定因素[,,,,,,,]都被插入序列包围,表明整个抗性基因座可以在种内和种间以及属内和属间进行转位。这是首次在孟加拉国从人类感染中报告的机制。然而,鉴于在 ST15 的高风险克隆中,通过一个可移动的接合质粒获得了,因此从 2017 年开始,在孟加拉国传播的风险很高。南亚对粘菌素耐药细菌病原体的流行病学的了解明显不足。Davies 和 Walsh 的报告(Lancet Infect Dis 18:256-257,https://doi.org/10.1016/S1473-3099(18)30072-0, 2018)表明,2016 年中国向印度、越南和韩国出口的粘菌素约为 1000 吨,主要用作家禽饲料添加剂。一些报告预测,南亚人类和牲畜中的的流行率将会增加。鉴于在印度、孟加拉国和巴基斯坦中高度流行,粘菌素已成为严重感染管理的不变选择,导致南亚出现类似的机制。系统检查南亚中变体的流行率和传播对于了解基因的驱动因素以及启动克服粘菌素耐药性的干预措施至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eaf/7067589/b74b595fd681/mSphere.00023-20-f0001.jpg

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