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定量预测离子型表面活性剂胶束溶液的结构和黏度:基于粗粒化 MARTINI 模拟的联合方法,随后进行反向映射全原子分子动力学模拟。

Quantitative Prediction of the Structure and Viscosity of Aqueous Micellar Solutions of Ionic Surfactants: A Combined Approach Based on Coarse-Grained MARTINI Simulations Followed by Reverse-Mapped All-Atom Molecular Dynamics Simulations.

机构信息

Department of Chemical Engineering, University of Patras and FORTH-ICE/HT, Patras, GR 26504, Greece.

Hellenic Open University, Patras, GR 26222, Greece.

出版信息

J Chem Theory Comput. 2020 May 12;16(5):3363-3372. doi: 10.1021/acs.jctc.0c00229. Epub 2020 Apr 23.

Abstract

We address the problem of the quantitative prediction of micelle formation in dilute aqueous solutions of ionic surfactants using sodium dodecyl sulfate (SDS) as a model system through a computational approach that involves three steps: (a) execution of coarse-grained simulations based on the MARTINI force field (with slightly modified parameters to afford the formation of large micelles); (b) reverse mapping of the final self-assembled coarse-grained configuration into an all-atom configuration; and (c) final relaxation of this all-atom configuration through short-time (on the order of a few tens of nanoseconds), detailed isothermal-isobaric molecular dynamics simulations using the CHARMM36 force field. For a given concentration of the solution in SDS molecules, the modified MARTINI-based coarse-grained simulations lead to the formation of large micelles characterized by mean aggregation numbers above the experimentally observed ones. However, by reintroducing the detailed chemical structure through a strategy that solves a well-defined geometric problem and re-equilibrating, these large micellar aggregates quickly dissolve to smaller ones and equilibrate to sizes that perfectly match the average micelle size measured experimentally at the given surfactant concentration. From the all-atom molecular dynamics simulations, we also deduce the surfactant diffusivity and the zero-shear rate viscosity, η of the solution, which are observed to compare very favorably with the few experimental values that we were able to find in the literature.

摘要

我们通过一种计算方法解决了在离子表面活性剂的稀水溶液中定量预测胶束形成的问题,以十二烷基硫酸钠(SDS)作为模型体系。该方法涉及三个步骤:(a)基于 MARTINI 力场执行粗粒模拟(稍微修改参数以形成大胶束);(b)将最终自组装的粗粒构型反向映射到全原子构型;(c)通过短时间(几十纳秒量级)、详细的等温等压分子动力学模拟,使用 CHARMM36 力场对全原子构型进行最终松弛。对于给定浓度的 SDS 分子溶液,经过修正的基于 MARTINI 的粗粒模拟导致大胶束的形成,其平均聚集数高于实验观察到的值。然而,通过通过解决明确定义的几何问题的策略重新引入详细的化学结构并重新平衡,可以使这些大胶束迅速溶解为更小的胶束并平衡到与在给定表面活性剂浓度下实验测量的平均胶束尺寸完全匹配的尺寸。从全原子分子动力学模拟中,我们还推断出表面活性剂的扩散系数 D 和溶液的零剪切速率粘度 η,它们与我们在文献中能够找到的少数实验值非常吻合。

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