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两种物种的近完整基因组:植物病原菌生物防治的资源。

Near-Complete Genomes of Two Species: A Resource for Biological Control of Plant Pathogens.

机构信息

China-Australia Joint Laboratory for Soil Ecological Health and Remediation, Ecology Institute, Qilu University of Technology (Shandong Academy of Sciences), Shandong 250013, China.

School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA 5064, Australia.

出版信息

Mol Plant Microbe Interact. 2020 Aug;33(8):1036-1039. doi: 10.1094/MPMI-03-20-0076-A. Epub 2020 Jun 10.

Abstract

species are widely used to control fungal and nematode diseases of crops. To date, only one complete genome has been sequenced, QM6a, a model fungus for industrial enzyme production, while the species or strains used for biological control of plant diseases are only available as draft genomes. Previously, we demonstrated that two strains ( and ) provide effective control of nematode and fungal plant pathogens. Based on deep sequencing using Illumina and Pacbio platforms, we have assembled high-quality genomes of the above two strains, with contig N reaching 4.2 and 1.7 Mbp, respectively, which is greater than those of published draft genomes. The genome data will provide a resource to assist research on the biological control mechanisms of spp.

摘要

物种被广泛用于防治农作物的真菌和线虫病害。迄今为止,仅测序了一个完整的基因组,QM6a,这是一种用于工业酶生产的模式真菌,而用于植物病害生物防治的物种或菌株仅提供草图基因组。以前,我们证明了两个菌株(和)可有效防治线虫和真菌植物病原体。基于 Illumina 和 Pacbio 平台的深度测序,我们分别组装了上述两个菌株的高质量基因组,其连丝 N 分别达到 4.2 和 1.7 Mbp,大于已发表的草图基因组。基因组数据将为研究 spp. 的生物防治机制提供资源。

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