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《测序普通小麦基因组:三国鼎立的故事》

The Battle to Sequence the Bread Wheat Genome: A Tale of the Three Kingdoms.

机构信息

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.

Collaborative Innovation Center of Crop Stress Biology & Institute of Plant Stress Biology, School of Life Science, Henan University, Kaifeng 475004, China.

出版信息

Genomics Proteomics Bioinformatics. 2020 Jun;18(3):221-229. doi: 10.1016/j.gpb.2019.09.005. Epub 2020 Jun 17.

Abstract

In the year 2018, the world witnessed the finale of the race to sequence the genome of the world's most widely grown crop, the common wheat. Wheat has been known to bear a notoriously large and complicated genome of a polyploidy nature. A decade competition to sequence the wheat genome initiated with a single consortium of multiple countries, taking a conventional strategy similar to that for sequencing Arabidopsis and rice, became ferocious over time as both sequencing technologies and genome assembling methodologies advanced. At different stages, multiple versions of genome sequences of the same variety (e.g., Chinese Spring) were produced by several groups with their special strategies. Finally, 16 years after the rice genome was finished and 9 years after that of maize, the wheat research community now possesses its own reference genome. Armed with these genomics tools, wheat will reestablish itself as a model for polyploid plants in studying the mechanisms of polyploidy evolution, domestication, genetic and epigenetic regulation of homoeolog expression, as well as defining its genetic diversity and breeding on the genome level. The enhanced resolution of the wheat genome should also help accelerate development of wheat cultivars that are more tolerant to biotic and/or abiotic stresses with better quality and higher yield.

摘要

在 2018 年,世界见证了全球广泛种植的作物——普通小麦基因组测序竞赛的终章。众所周知,小麦具有一个异常庞大且复杂的多倍体基因组。十年前,多个国家的单一联盟启动了小麦基因组测序竞赛,他们采用了类似于拟南芥和水稻测序的常规策略,但随着测序技术和基因组组装方法的不断进步,竞争变得愈发激烈。在不同阶段,多个团队采用不同的策略,产生了同一品种(如中国春)的多个版本的基因组序列。最终,在完成水稻基因组 16 年后,以及玉米基因组完成 9 年后,小麦研究界现在拥有了自己的参考基因组。有了这些基因组学工具,小麦将重新成为研究多倍体进化、驯化、同系基因表达的遗传和表观遗传调控以及在基因组水平上定义其遗传多样性和育种机制的多倍体植物的模式生物。小麦基因组分辨率的提高也应该有助于加速开发对生物和/或非生物胁迫更具耐受性、品质更好、产量更高的小麦品种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4dd0/7801200/68b7108ca535/gr1.jpg

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