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乌扎拉莫病毒基因组特征分析及其对人类的侵袭感染。

Genomic characterization of Uzaramo for human invasive infection.

机构信息

Department of Microbiology Laboratory, Shanghai Municipal Center for Disease Control and Prevention, Shanghai 200336, PR China.

Panzhihua Center for Disease Control and Prevention, Panzhihua 617000, PR China.

出版信息

Microb Genom. 2020 Jul;6(7). doi: 10.1099/mgen.0.000401.

Abstract

is composed of a wide variety of serovars, causing human self-limited gastrointestinal illnesses or invasive infections. Invasive non-typhoidal (iNTS) is well documented, with high mortality for children and immunocompromised adults in sub-Saharan Africa and has recently been reported in Southeast Asia. However, iNTS in China remains unknown. In May 2019, a case of invasive infection caused by serovar Uzaramo (. Uzaramo) was reported for the first time in China. Phylogenomic analysis was performed by genomic sequencing the available contextualized isolates, which separated the two Chinese strains into different sublineages. Both phenotypic and genomic characterization demonstrated that the . Uzaramo isolates showed in general low antimicrobial resistance potential, except one isolated from lake-water in China. Additional comparative genomic analysis and killing assays suggested a unique combination of virulence factors, including typhoid toxin and fimbrial adhesin, which might play a role in the invasive infection. This study highlights that the transparency of global surveillance genomic data could accelerate understanding of virulence and antimicrobial resistance makeup of a previously unknown threat.

摘要

由多种血清型组成,引起人类自限性胃肠道疾病或侵袭性感染。侵袭性非伤寒型(iNTS)已有大量记载,在撒哈拉以南非洲地区,儿童和免疫功能低下的成年人的死亡率很高,最近在东南亚也有报道。然而,中国的 iNTS 情况尚不清楚。2019 年 5 月,中国首次报告了由血清型 Uzaramo(Uzaramo)引起的侵袭性感染病例。通过对现有上下文相关分离株进行基因组测序进行了基因组分析,将这两个中国分离株分为不同的亚谱系。表型和基因组特征分析表明,除了从中国湖水分离出的一株外,Uzaramo 分离株通常表现出较低的抗药性。额外的比较基因组分析和杀伤试验表明,存在独特的毒力因子组合,包括伤寒毒素和菌毛黏附素,这可能在侵袭性感染中发挥作用。本研究强调,全球监测基因组数据的透明度可以加速了解以前未知威胁的毒力和抗药性构成。

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