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β-发夹是一种通过拓扑异构酶 IV 支持正超螺旋的最小锁扣。

A β-hairpin is a Minimal Latch that Supports Positive Supercoiling by Reverse Gyrase.

机构信息

Institute for Physical Chemistry, University of Muenster, Corrensstrasse 30, D-48149 Muenster, Germany.

Institute for Physical Chemistry, University of Muenster, Corrensstrasse 30, D-48149 Muenster, Germany.

出版信息

J Mol Biol. 2020 Jul 24;432(16):4762-4771. doi: 10.1016/j.jmb.2020.06.018. Epub 2020 Jun 24.

Abstract

Reverse gyrase is a unique type I topoisomerase that catalyzes the introduction of positive supercoils into DNA in an ATP-dependent reaction. Supercoiling is the result of a functional cooperation of the N-terminal helicase domain with the C-terminal topoisomerase domain. The helicase domain is a nucleotide-dependent conformational switch that alternates between open and closed states with different affinities for single- and double-stranded DNA. The isolated helicase domain as well as full-length reverse gyrase can transiently unwind double-stranded regions in an ATP-dependent reaction. The latch region of reverse gyrase, an insertion into the helicase domain with little conservation in sequence and length, has been proposed to coordinate events in the helicase domain with strand passage by the topoisomerase domain. Latch deletions lead to a reduction in or complete loss of supercoiling activity. Here we show that the latch consists of two functional parts, a globular domain that is dispensable for DNA supercoiling and a β-hairpin that connects the globular domain to the helicase domain and is required for supercoiling activity. The β-hairpin thus constitutes a minimal latch that couples ATP-dependent processes in the helicase domain to DNA processing by the topoisomerase domain.

摘要

反转酶是一种独特的 I 型拓扑异构酶,能够在 ATP 依赖性反应中将正超螺旋引入 DNA 中。超螺旋是 N 端解旋酶结构域与 C 端拓扑异构酶结构域功能合作的结果。解旋酶结构域是一个核苷酸依赖性构象开关,在单链和双链 DNA 之间具有不同的亲和力,在开放和关闭状态之间交替。分离的解旋酶结构域以及全长反转酶都可以在 ATP 依赖性反应中瞬时解开双链区域。反转酶的闩锁区是插入解旋酶结构域中的一个插入序列,在序列和长度上几乎没有保守性,它被认为可以协调解旋酶结构域中的事件,并通过拓扑异构酶结构域进行链转移。闩锁缺失会导致超螺旋活性降低或完全丧失。在这里,我们表明闩锁由两个功能部分组成,一个球形结构域对于 DNA 超螺旋化是可有可无的,而一个β发夹将球形结构域连接到解旋酶结构域,并需要超螺旋化活性。因此,β发夹构成了一个最小的闩锁,将解旋酶结构域中的 ATP 依赖性过程与拓扑异构酶结构域的 DNA 加工偶联起来。

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