Guyomard-Rabenirina Stephanie, Reynaud Yann, Pot Matthieu, Albina Emmanuel, Couvin David, Ducat Celia, Gruel Gaëlle, Ferdinand Severine, Legreneur Pierre, Le Hello Simon, Malpote Edith, Sadikalay Syndia, Talarmin Antoine, Breurec Sebastien
Transmission, Reservoir and Diversity of Pathogens Unit, Institut Pasteur de la Guadeloupe, Pointe-a-Pitre, France.
UMR ASTRE, CIRAD, Montpellier, France.
Front Microbiol. 2020 Jul 10;11:1524. doi: 10.3389/fmicb.2020.01524. eCollection 2020.
Limited data are available on the contribution of wildlife to the spread of antibacterial resistance. We determined the prevalence of resistance to antibiotics in isolates collected from wild animals in 2013 and 2014 and the genetic basis for resistance to third-generation cephalosporin in Guadeloupe. We recovered 52 antibiotic-resistant (AR) strains from 48 of the 884 (5.4%) wild animals tested (46 iguanas, 181 birds, 289 anoles, and 368 rodents at 163 sampling sites). Rodents had higher rates of carriage ( = 38, 10.3%) than reptiles and birds (2.4% and 1.1%, respectively, < 0.001). A significant association ( < 0.001) was found between the degree of anthropization and the frequency of AR carriage for all species. The carriage rate of ciprofloxacin- and cefotaxime-resistant isolates was 0.7% (6/884) and 1.5% (13/884), respectively. Most (65.4%) AR were multi-drug resistant, and the prevalence of extended-spectrum beta-lactamase (ESBL)-producing was low ( = 7, 0.8%) in all species. Eight ESBL-producing were recovered, two genetically unrelated isolates being found in one bird. These isolates and 20 human invasive ESBL isolates collected in Guadeloupe during the same period were investigated by whole genome sequencing. was the only ESBL gene shared by three animal classes (humans, = 2; birds, = 2; rodents, = 2). The gene and most of the antimicrobial resistance genes were present in a large conjugative IncI1 plasmid that was highly similar (>99% nucleotide identity) to ESBL-carrying plasmids found in several countries in Europe and in Australia. Although the prevalence of ESBL-producing isolates was very low in wild animals, it is of concern that the well-conserved IncI1 plasmid-carrying is widespread and occurs in various strains from animals and humans.
关于野生动物在抗生素耐药性传播中的作用,现有数据有限。我们测定了2013年和2014年从野生动物采集的分离株中抗生素耐药性的流行情况,以及瓜德罗普岛对第三代头孢菌素耐药的遗传基础。我们从884只接受检测的野生动物中的48只(5.4%)身上分离出52株抗生素耐药(AR)菌株(在163个采样点的46只鬣蜥、181只鸟类、289只安乐蜥和368只啮齿动物)。啮齿动物的携带率(n = 38,10.3%)高于爬行动物和鸟类(分别为2.4%和1.1%,P < 0.001)。在所有物种中,人为化程度与AR携带频率之间存在显著关联(P < 0.001)。对环丙沙星和头孢噻肟耐药的分离株携带率分别为0.7%(6/884)和1.5%(13/884)。大多数(65.4%)AR分离株具有多重耐药性,所有物种中产超广谱β-内酰胺酶(ESBL)的分离株流行率较低(n = 7,0.8%)。共分离出8株产ESBL的分离株,在一只鸟类中发现了两株基因不相关的分离株。通过全基因组测序对这些分离株以及同期在瓜德罗普岛收集的20株人类侵袭性ESBL分离株进行了研究。CTX-M是三个动物类别(人类,n = 2;鸟类,n = 2;啮齿动物,n = 2)共有的唯一ESBL基因。CTX-M基因和大多数抗菌耐药基因存在于一个大型接合IncI1质粒中,该质粒与在欧洲几个国家和澳大利亚发现的携带ESBL的质粒高度相似(核苷酸同一性>99%)。尽管野生动物中产ESBL分离株的流行率非常低,但令人担忧的是,携带CTX-M的保守性良好的IncI1质粒广泛存在,并出现在来自动物和人类的各种分离株中。