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深海嗜热噬菌体 GVE2 尾刺蛋白的结构与功能特征分析。

Structural and functional characterization of the deep-sea thermophilic bacteriophage GVE2 tailspike protein.

机构信息

Guangling College, Yangzhou University, China; Marine Science & Technology Institute, College of Environmental Science and Engineering, Yangzhou University, China.

Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, China; Institute of Physical Science and Information Technology, Anhui University, China.

出版信息

Int J Biol Macromol. 2020 Dec 1;164:4415-4422. doi: 10.1016/j.ijbiomac.2020.09.053. Epub 2020 Sep 11.

Abstract

The genome of the thermophilic bacteriophage GVE2 encodes a putative tailspike protein (GVE2 TSP). Here we report the crystal structure of the truncated GVE2 TSP at 2.0-Å resolution lacking 204 amino acid residues at its N-terminus (ΔnGVE2 TSP), possessing a "vase" outline similar to other TSP's structures. However, ΔnGVE2 TSP displays structural characteristics distinct from other TSPs. Despite lacking 204 amino acid residues, the head domain forms an asymmetric trimer compared to symmetric in other TSPs, suggesting that its long N-terminus may be unique to the long-tailed bacteriophages. Furthermore, the α-helix of the neck is 5-7 amino acids longer than that of other TSPs. The most striking feature is that its binding domain consists of a β-helix with 10 turns, whereas other TSPs have 13 turns, even including the phage Sf6 TSP, which is the closest homologue of GVE2 TSP. The C-terminal structure is also quite different with those of other TSPs. Furthermore, we observed that ΔnGVE2 TSP can slow down growth of its host, demonstrating that this TSP is essential for the phage GVE2 to infect its host. Overall, the structural characteristics suggest that GVE2 TSP may be more primitive than other phage TSPs.

摘要

嗜热噬菌体 GVE2 的基因组编码了一个假定的尾刺蛋白(GVE2 TSP)。在这里,我们报道了截短的 GVE2 TSP 的晶体结构,分辨率为 2.0Å,其 N 端缺失了 204 个氨基酸残基(ΔnGVE2 TSP),具有类似于其他 TSP 结构的“花瓶”轮廓。然而,ΔnGVE2 TSP 显示出与其他 TSP 不同的结构特征。尽管缺失了 204 个氨基酸残基,但头部结构形成了不对称三聚体,而不是其他 TSP 中的对称三聚体,这表明其长的 N 端可能是长尾噬菌体所特有的。此外,颈部的α-螺旋比其他 TSP 长 5-7 个氨基酸。最显著的特征是,其结合域由 10 个环的β-螺旋组成,而其他 TSP 有 13 个环,甚至包括 Sf6 TSP 噬菌体,它是 GVE2 TSP 的最接近同源物。C 端结构也与其他 TSP 有很大不同。此外,我们观察到 ΔnGVE2 TSP 可以减缓其宿主的生长,表明这种 TSP 对于噬菌体 GVE2 感染其宿主是必不可少的。总的来说,结构特征表明 GVE2 TSP 可能比其他噬菌体 TSP 更为原始。

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