Department of Environmental Biotechnology, KRIBB School of Biotechnology, Korea University of Science and Technology (UST), 217 Gajeong-ro, Yuseong-gu, Daejeon 34113, Republic of Korea.
Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
Int J Syst Evol Microbiol. 2020 Dec;70(12):6133-6141. doi: 10.1099/ijsem.0.004508.
A novel Gram-stain-negative, aerobic, non-spore-forming, non-motile, and rod-shaped bacterium, strain ETT8 was isolated from a chemostat culture of microalga sp. YC001. Optimal growth was with 0-2% NaCl and at 25-37 °C on R2A medium. Phylogenetic analysis based on the 16S rRNA gene and genome sequence showed that strain ETT8 belongs to the genus , with the close neighbours being DRYC-M-16 (98.1 %), DJC (97.6 %), SY72 (96.9 %), K13M18 (96.8 %), and RCRI19 (96.5 %). The genomic comparison of strain ETT8 with type species in the genus was analysed using the genome-to-genome distance calculator (GGDC), average nucleotide identity (ANI), and average amino acid identity (AAI) (values indicated ≤17.7, ≤75.4 and ≤71.9 %, respectively). The genomic DNA G+C content of strain ETT8 was 64.4 %, plus C c and C-iso were the major fatty acids and Q-10 the major respiratory quinone. Strain ETT8 contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine aminolipid, and four unidentified lipids as the major polar lipids. Based on the chemotaxonomic, genotypic, and phenotype results, strain ETT8 was recognized as a novel species of the genus for which the name sp. nov. is proposed. The type strain is ETT8 (=KCTC 72206=JCM 31893=MCC 4339).
一株新型革兰氏阴性、需氧、不产芽孢、不运动、杆状的细菌,菌株 ETT8 是从微藻 sp. YC001 的恒化器培养物中分离得到的。在 R2A 培养基上,最佳生长条件为 0-2%NaCl 和 25-37°C。基于 16S rRNA 基因和基因组序列的系统发育分析表明,菌株 ETT8 属于 属,与近缘种的 DRYC-M-16(98.1%)、DJC(97.6%)、SY72(96.9%)、K13M18(96.8%)和 RCRI19(96.5%)最为接近。使用基因组到基因组距离计算器(GGDC)、平均核苷酸同一性(ANI)和平均氨基酸同一性(AAI)对菌株 ETT8 与属内模式种的基因组比较进行分析(分别表示≤17.7、≤75.4 和≤71.9%)。菌株 ETT8 的基因组 DNA G+C 含量为 64.4%,主要脂肪酸为 C c 和 C-iso,主要呼吸醌为 Q-10。菌株 ETT8 含有二磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、磷脂酰胆碱氨基脂和四种未鉴定的脂类作为主要极性脂类。基于化学分类、基因型和表型结果,菌株 ETT8 被认定为 属的一个新种,建议命名为 sp. nov.。其模式菌株为 ETT8(=KCTC 72206=JCM 31893=MCC 4339)。