Applied Biotechnology Research Center, Baqiyatallah University of Medical Sciences, Tehran, Iran.
Molecular Biology Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran.
J Biomol Struct Dyn. 2022 Apr;40(6):2546-2556. doi: 10.1080/07391102.2020.1841025. Epub 2020 Oct 29.
Chemokines are the large family of chemotactic cytokines that play an important role in leukocyte movement and migration stimulation. Until now, several antibody-cytokine (chemokine) fusion proteins have been investigated in clinical trials because of their ability to evoke the circulating leukocytes far from the tumor site. In this case, creating the concentration gradient regarding the chemokine is very important to recruit the circulating leukocytes with maximum performance to the tumor environment. To achieve a proper gradient, the chemokine separation from the tumor antigen-bounded antibody can be very crucial. Thus, we designed a novel linker that can be cleaved by enzymes presented around the tumor site including cathepsin B, urokinase-type plasminogen activator (uPA) and matrix metalloproteinases (MMPs). Also, it can inhibit tumor progression by competing with the native substrate of key proteases in the tumor microenvironment. The proposed linker was evaluated using some bioinformatics approaches. In silico results showed that the linker is structurally stable and could be detected and cleaved using the mentioned enzymes.Communicated by Ramaswamy H. Sarma.
趋化因子是趋化细胞因子的大家族,在白细胞运动和迁移刺激中发挥重要作用。到目前为止,已经有几种抗体-细胞因子(趋化因子)融合蛋白在临床试验中进行了研究,因为它们能够在远离肿瘤部位的地方引发循环白细胞。在这种情况下,创造趋化因子的浓度梯度对于招募具有最佳性能的循环白细胞进入肿瘤环境非常重要。为了达到适当的梯度,从与肿瘤抗原结合的抗体中分离趋化因子可能非常关键。因此,我们设计了一种新的连接子,它可以被肿瘤部位存在的酶切割,包括组织蛋白酶 B、尿激酶型纤溶酶原激活物 (uPA) 和基质金属蛋白酶 (MMPs)。此外,它还可以通过与肿瘤微环境中关键蛋白酶的天然底物竞争来抑制肿瘤进展。所提出的连接子使用了一些生物信息学方法进行了评估。计算机模拟结果表明,该连接子结构稳定,可以使用所述酶进行检测和切割。