National Centre for Microbial Resource, National Centre for Cell Science, Ganeshkhind, Pune 411 007, India.
Department of Microbiology, Tuljaram Chaturchand College, Baramati, Maharashtra 413 102, India.
Int J Syst Evol Microbiol. 2020 Dec;70(12):6468-6475. doi: 10.1099/ijsem.0.004559.
A novel e-waste-degrading strain, PE08, was isolated from contaminated soil collected from a paper mill yard in Lalkuan, Uttarakhand, India. Strain PE08 was Gram-stain-negative, rod-shaped, aerobic, oxidase-positive and catalase-positive. Optimum growth was observed at 30 °C (range, 5-40 °C), with 1-2 % NaCl (range, 0-3 %) and at pH 7 (range 6-11). The phylogeny based on 16S rRNA gene sequences delineated strain PE08 to the genus and showed highest sequence similarity to KF707 (98.70 %), followed by DSM 50071 (98.62 %) and DSM 21078 (97.93 %). The genome of strain PE08 was sequenced and had one scaffold of 6056953 bp, 99.84 % completeness and 182× coverage were obtained. The G+C content in the genome was 64.24 mol%. The DNA-DNA hybridization and average nucleotide identity values between strain PE08 and its closely related type strain, DSM 21078 were below 34.8 % and 87.96 %, respectively. The phylogenetic analysis based on whole-genome sequence and concatenated GyrB and RpoB proteins revealed that strain PE08 forms a district clade in the family . The predominant fatty acids were summed feature 8 (Cω7 and/or C ω6), summed feature 3 (Cω7 and/or Cω6), C and C. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The phenotypic, chemotaxonomic and genetic analysis, including overall genome relatedness index values, indicated that strain PE08 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is PE08 (=MCC 3792=KCTC 72454=CCUG 73691).
从印度北阿坎德邦拉克鲁恩的一家造纸厂院子里采集的污染土壤中分离到一株新型电子废物降解菌株 PE08。菌株 PE08 革兰氏染色阴性,杆状,需氧,氧化酶阳性,过氧化氢酶阳性。最佳生长温度为 30°C(范围为 5-40°C),最佳盐度为 1-2%(范围为 0-3%),最佳 pH 值为 7(范围为 6-11)。基于 16S rRNA 基因序列的系统发育分析将菌株 PE08 划定到属,与 KF707 的序列相似性最高(98.70%),其次是 DSM 50071(98.62%)和 DSM 21078(97.93%)。对菌株 PE08 的基因组进行了测序,得到一个长度为 6056953bp 的支架,获得了 99.84%的完整性和 182×的覆盖率。基因组的 G+C 含量为 64.24mol%。菌株 PE08 与其密切相关的模式菌株 DSM 21078 的 DNA-DNA 杂交和平均核苷酸同一性值分别低于 34.8%和 87.96%。基于全基因组序列和串联 GyrB 和 RpoB 蛋白的系统发育分析表明,菌株 PE08 在家族中形成一个独立的分支。主要脂肪酸为 sumFeature8(Cω7 和/或 Cω6)、sumFeature3(Cω7 和/或 Cω6)、C16:0 和 C18:1ω7c。主要极性脂为双磷脂酰甘油、磷脂酰甘油和磷脂酰乙醇胺。表型、化学分类和遗传分析,包括全基因组相关指数值,表明菌株 PE08 代表属的一个新种,建议命名为 sp. nov.。模式菌株为 PE08(=MCC 3792=KCTC 72454=CCUG 73691)。