Antonacci Yuri, Astolfi Laura, Nollo Giandomenico, Faes Luca
Department of Computer, Control and Management Engineering, Sapienza University of Rome, 00185 Rome, Italy.
Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS) Fondazione Santa Lucia, 00179 Rome, Italy.
Entropy (Basel). 2020 Jul 1;22(7):732. doi: 10.3390/e22070732.
The framework of information dynamics allows the dissection of the information processed in a network of multiple interacting dynamical systems into meaningful elements of computation that quantify the information generated in a target system, stored in it, transferred to it from one or more source systems, and modified in a synergistic or redundant way. The concepts of information transfer and modification have been recently formulated in the context of linear parametric modeling of vector stochastic processes, linking them to the notion of Granger causality and providing efficient tools for their computation based on the state-space (SS) representation of vector autoregressive (VAR) models. Despite their high computational reliability these tools still suffer from estimation problems which emerge, in the case of low ratio between data points available and the number of time series, when VAR identification is performed via the standard ordinary least squares (OLS). In this work we propose to replace the OLS with penalized regression performed through the Least Absolute Shrinkage and Selection Operator (LASSO), prior to computation of the measures of information transfer and information modification. First, simulating networks of several coupled Gaussian systems with complex interactions, we show that the LASSO regression allows, also in conditions of data paucity, to accurately reconstruct both the underlying network topology and the expected patterns of information transfer. Then we apply the proposed VAR-SS-LASSO approach to a challenging application context, i.e., the study of the physiological network of brain and peripheral interactions probed in humans under different conditions of rest and mental stress. Our results, which document the possibility to extract physiologically plausible patterns of interaction between the cardiovascular, respiratory and brain wave amplitudes, open the way to the use of our new analysis tools to explore the emerging field of Network Physiology in several practical applications.
信息动力学框架允许将在多个相互作用的动力系统网络中处理的信息分解为有意义的计算元素,这些元素量化了目标系统中生成、存储、从一个或多个源系统传输到该目标系统并以协同或冗余方式修改的信息。信息传递和修改的概念最近在向量随机过程的线性参数建模背景下得以阐述,将它们与格兰杰因果关系的概念联系起来,并基于向量自回归(VAR)模型的状态空间(SS)表示为其计算提供了有效的工具。尽管这些工具具有很高的计算可靠性,但在可用数据点与时间序列数量之比很低的情况下,当通过标准普通最小二乘法(OLS)进行VAR识别时,它们仍然存在估计问题。在这项工作中,我们建议在计算信息传递和信息修改度量之前,用通过最小绝对收缩和选择算子(LASSO)执行的惩罚回归代替OLS。首先,通过模拟具有复杂相互作用的几个耦合高斯系统网络,我们表明LASSO回归即使在数据匮乏的情况下,也能准确重建基础网络拓扑和预期的信息传递模式。然后,我们将提出的VAR - SS - LASSO方法应用于一个具有挑战性的应用场景,即研究在不同休息和精神压力条件下人类大脑与外周相互作用的生理网络。我们的结果证明了提取心血管、呼吸和脑电波幅度之间生理上合理的相互作用模式的可能性,为在几个实际应用中使用我们的新分析工具探索网络生理学这一新兴领域开辟了道路。