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(芸香科)的完整叶绿体基因组序列:一种广泛使用的民间草药。

Complete chloroplast genome sequence of (Rutaceae): a widely used folk medicinal herb.

作者信息

Liu Huihui, Zhao Yuyang, Zhou Junhui, Ma Qing, Wang Xinhong, Hua Zhongyi

机构信息

China Resources Sanjiu Medical & Pharmaceutical Co, Ltd, Shenzhen, China.

National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China.

出版信息

Mitochondrial DNA B Resour. 2020 Nov 11;5(3):3696-3697. doi: 10.1080/23802359.2020.1829518.

Abstract

is traditionally used for management of gut, air way and cardiovascular disorders. In this study, we sequenced the complete chloroplast genome of based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of is 160,280 bp in length consisting of large and small single-copy regions of length 87,605 and 18,609 bp, separated by two IR regions of 27,033 bp. The overall GC content was 38.61%. De novo assembly and annotation showed the presence of unique genes with 85 protein-coding genes, 29 tRNA genes, and eight rRNA genes. A maximum-likelihood phylogenomic analysis showed that was closely related to .

摘要

传统上用于肠道、气道和心血管疾病的管理。在本研究中,我们基于下一代测序对[物种名称]的完整叶绿体基因组进行了测序,并利用这些数据评估基因组资源。[物种名称]的叶绿体基因组长度为160,280 bp,由长度分别为87,605和18,609 bp的大单拷贝和小单拷贝区域组成,中间被两个27,033 bp的反向重复(IR)区域隔开。总体GC含量为38.61%。从头组装和注释显示存在独特的基因,包括85个蛋白质编码基因、29个tRNA基因和8个rRNA基因。最大似然系统发育基因组分析表明,[物种名称]与[另一物种名称]密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/909c/7671698/8cc8142d3238/TMDN_A_1829518_F0001_B.jpg

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