Department of Statistics, Computer Science, Applications (DISIA), University of Florence, Florence (Italy);
Florence Center for Data Science, Florence (Italy).
Epidemiol Prev. 2020 Sep-Dec;44(5-6 Suppl 2):193-199. doi: 10.19191/EP20.5-6.S2.118.
facing the SARS-CoV-2 epidemic requires intensive testing on the population to early identify and isolate infected subjects. Although RT-PCR is the most reliable technique to detect ongoing infections, serological tests are frequently proposed as tools in heterogeneous screening strategies.
to analyse the performance of a screening strategy proposed by the local government of Tuscany (Central Italy), which first uses qualitative rapid tests for antibody detection, and then RT-PCR tests on the positive subjects.
a simulation study is conducted to investigate the number of RT-PCR tests required by the screening strategy and the undetected ongoing infections in a pseudo-population of 500,000 subjects, under different prevalence scenarios and assuming a sensitivity of the serological test ranging from 0.50 to 0.80 (specificity 0.98). A compartmental model is used to predict the number of new infections generated by the false negatives two months after the screening, under different values of the infection reproduction number.
assuming a sensitivity equal to 0.80 and a prevalence of 0.3%, the screening procedure would require on average 11,167 RT-PCR tests and would produce 300 false negatives, responsible after two months of a number of contagions ranging from 526 to 1,132, under the optimistic scenario of a reproduction number between 0.5 to 1. Resources and false negatives increase with the prevalence.
the analysed screening procedure should be avoided unless the prevalence and the rate of contagion are very low. The cost and effectiveness of the screening strategies should be evaluated in the actual context of the epidemic, accounting for the fact that it may change over time.
应对 SARS-CoV-2 疫情需要对人群进行密集检测,以便及早发现和隔离受感染的个体。虽然 RT-PCR 是检测持续感染最可靠的技术,但血清学检测经常被提议作为异质筛查策略中的工具。
分析托斯卡纳(意大利中部)地方政府提出的筛查策略的性能,该策略首先使用定性快速检测法检测抗体,然后对阳性个体进行 RT-PCR 检测。
通过模拟研究,在 50 万个体的伪人群中,在不同流行率的情况下,以及在假设血清学检测的敏感性在 0.50 到 0.80 之间(特异性为 0.98)的情况下,研究筛查策略所需的 RT-PCR 检测数量和未被发现的持续感染。使用房室模型来预测在不同感染繁殖数下,两个月后假阴性个体产生的新感染数量。
假设敏感性为 0.80,流行率为 0.3%,筛查程序平均需要进行 11167 次 RT-PCR 检测,会产生 300 例假阴性,在繁殖数在 0.5 到 1 之间的乐观情况下,两个月后会导致 526 到 1132 例的传染,资源和假阴性会随着流行率的增加而增加。
除非流行率和传染率非常低,否则应避免使用分析中的筛查程序。应在疫情的实际背景下评估筛查策略的成本和效果,同时考虑到其可能随时间而变化的事实。