Zhang Gege, Xu Meng, Zhang Chenglong, Jia Huixia, Zhang Hua, He Maoxian, Liu Wenguang
CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
University of Chinese Academy of Sciences, Beijing, China.
Front Physiol. 2021 Feb 24;12:632518. doi: 10.3389/fphys.2021.632518. eCollection 2021.
The giant triton snail (, an endangered gastropod species of ecological and economic importance, is widely distributed in coral reef ecosystems of the Indo-West Pacific region and the tropical waters of the South China Sea. Limited research on molecular mechanisms can be conducted because the complete genomic information on this species is unavailable. Hence, we performed transcriptome sequencing of the foot muscle and mantle using the Illumina HiSeq sequencing platform. In 109,722 unigenes, we detected 7,994 (3,196 up-regulated and 4,798 down-regulated) differentially expressed genes (DEGs) from the foot muscle and mantle transcriptomes. These DEGs will provide valuable resources to improve the understanding of molecular mechanisms involved in biomineralization of In the Gene Ontology (GO) database, DEGs were clustered into three main categories (biological processes, molecular functions, and cellular components) and were involved in 50 functional subcategories. The top 20 GO terms in the molecular function category included sulfotransferase activity, transferring sulfur-containing groups, and calcium ion binding, which are terms considered to be related to biomineralization. In KEGG classifications, transcriptomic DEGs were mainly enriched in glycosaminoglycan biosynthesis-chondroitin sulfate/dermatan sulfate, and sulfur metabolism pathway, which may be related to biomineralization. The results of qPCR showed that three of the eight genes examined were significantly up-regulated in the mantle. The phylogenetic tree of BMP1 suggested a significant divergence between homologous genes in . Our results improve the understanding of biomineralization in and provide fundamental transcriptome information to study other molecular mechanisms such as reproduction.
大法螺(Charonia tritonis)是一种具有生态和经济重要性的濒危腹足纲物种,广泛分布于印度 - 西太平洋地区的珊瑚礁生态系统以及中国南海的热带水域。由于该物种的完整基因组信息不可用,因此关于其分子机制的研究有限。因此,我们使用Illumina HiSeq测序平台对其足部肌肉和外套膜进行了转录组测序。在109,722个单基因中,我们从足部肌肉和外套膜转录组中检测到7994个(3196个上调和4798个下调)差异表达基因(DEG)。这些DEG将为增进对大法螺生物矿化所涉及分子机制的理解提供有价值的资源。在基因本体论(GO)数据库中,DEG被聚类为三个主要类别(生物过程、分子功能和细胞成分),并涉及50个功能亚类。分子功能类别中排名前20的GO术语包括磺基转移酶活性、转移含硫基团和钙离子结合,这些术语被认为与生物矿化有关。在KEGG分类中,转录组DEG主要富集在糖胺聚糖生物合成 - 硫酸软骨素/硫酸皮肤素以及硫代谢途径中,这可能与生物矿化有关。qPCR结果表明,所检测的8个基因中有3个在外套膜中显著上调。BMP1的系统发育树表明大法螺同源基因之间存在显著差异。我们的结果增进了对大法螺生物矿化的理解,并为研究其他分子机制(如繁殖)提供了基础转录组信息。