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NADH/NAD类似物氢化物隧道反应中供体-受体距离与动力学同位素效应温度依赖性之间的直接关联

Direct Correlation between Donor-Acceptor Distance and Temperature Dependence of Kinetic Isotope Effects in Hydride-Tunneling Reactions of NADH/NAD Analogues.

作者信息

Bai Mingxuan, Koirala Shailendra, Lu Yun

机构信息

Department of Chemistry, Southern Illinois University Edwardsville, Edwardsville, Illinois 62026, United States.

出版信息

J Org Chem. 2021 Jun 4;86(11):7500-7507. doi: 10.1021/acs.joc.1c00497. Epub 2021 May 26.

DOI:10.1021/acs.joc.1c00497
PMID:34037396
Abstract

Recent study of structural effects on primary kinetic isotope effects (1° KIEs) of H-transfer reactions in enzymes and solution revealed that a more rigid reaction system gave rise to a weaker temperature dependence of 1° KIEs, i.e., a smaller isotopic activation energy difference (Δ = - ). This has been explained within the contemporary vibrationally assisted activated H-tunneling (VA-AHT) model in which rigidity is defined according to the density of donor-acceptor distance (DAD) populations at the tunneling ready state (TRS) sampled by heavy atom motions. To test the relationship between DAD and Δ in the model, we developed a computational method to obtain the TRS structures for H-transfer reactions. The method was applied to three hydride transfer reactions of NADH/NAD analogues for which the Δ's as well as secondary (2°) KIEs have been reported. The 2° KIEs computed from each TRS structure were fitted to the observed values to obtain the optimal TRSs/DAD's. It was found that a shorter DAD does correspond with a smaller Δ. This appears to support the VA-AHT model. Moreover, an analysis of hybridizations at the bent TRS structures shows that rehybridizations at the donor-acceptor centers are much more advanced than predicted from the classical mechanism. This implies that more orbital preparations are required for the nonclassical H-tunneling to take place.

摘要

最近对酶和溶液中氢转移反应的一级动力学同位素效应(1°KIEs)的结构影响的研究表明,反应体系越刚性,1°KIEs的温度依赖性越弱,即同位素活化能差越小(Δ = - )。这在当代振动辅助活化氢隧穿(VA - AHT)模型中得到了解释,在该模型中,刚性是根据重原子运动在隧穿就绪状态(TRS)下供体 - 受体距离(DAD)种群的密度来定义的。为了测试模型中DAD与Δ之间的关系,我们开发了一种计算方法来获得氢转移反应的TRS结构。该方法应用于已报道Δ以及二级(2°)KIEs的NADH / NAD类似物的三个氢化物转移反应。将从每个TRS结构计算得到的2°KIEs与观测值进行拟合,以获得最佳的TRS / DAD。结果发现,较短的DAD确实对应较小的Δ。这似乎支持了VA - AHT模型。此外,对弯曲TRS结构处杂化的分析表明,供体 - 受体中心处的再杂化比经典机制预测的要先进得多。这意味着非经典氢隧穿发生需要更多的轨道准备。

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引用本文的文献

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