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环状 RNA 作为癌症生物标志物的应用。

The Use of circRNAs as Biomarkers of Cancer.

机构信息

Molecular Oncology Group, Biodonostia Research Institute, San Sebastián, Spain.

IKERBASQUE, Basque Foundation for Science, Bilbao, Spain.

出版信息

Methods Mol Biol. 2021;2348:307-341. doi: 10.1007/978-1-0716-1581-2_21.

Abstract

CircRNAs are a subclass of lncRNAs that have been found to be abundantly present in a wide range of species, including humans. CircRNAs are generally produced by a noncanonical splicing event called backsplicing that is dependent on the canonical splicing machinery, giving rise to circRNAs classified into three main categories: exonic circRNA, circular intronic RNA, and exon-intron circular RNA. Notably, circRNAs possess functional importance and display their functions through different mechanisms of action including sponging miRNAs, or even being translated into functional proteins. In addition, circRNAs also have great potential as biomarkers, particularly in cancer, thanks to their high stability, tissue type and developmental stage specificity, and their presence in biological fluids, which make them promising candidates as noninvasive biomarkers. In this chapter, we describe the most commonly used techniques for the study of circRNAs as cancer biomarkers, including high-throughput techniques such as RNA-Seq and microarrays, and other methods to analyze the presence of specific circRNAs in patient samples.

摘要

CircRNAs 是一类 lncRNAs,它们在包括人类在内的许多物种中广泛存在。CircRNAs 通常是通过一种称为反向剪接的非规范剪接事件产生的,该事件依赖于规范的剪接机制,产生了三类主要的 circRNAs:外显子 circRNA、环状内含子 RNA 和外显子-内含子环状 RNA。值得注意的是,circRNAs 具有功能重要性,并通过不同的作用机制发挥其功能,包括海绵 miRNA,甚至被翻译成功能性蛋白质。此外,circRNAs 也具有作为生物标志物的巨大潜力,特别是在癌症中,这要归功于它们的高稳定性、组织类型和发育阶段特异性以及它们在生物体液中的存在,这使它们成为有前途的非侵入性生物标志物候选者。在本章中,我们描述了用于研究 circRNAs 作为癌症生物标志物的最常用技术,包括高通量技术,如 RNA-Seq 和微阵列,以及其他方法来分析患者样本中特定 circRNAs 的存在。

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