Zhao Chang-Yi, Hua Chun-Hui, Li Chang-Hua, Zheng Rui-Zhe, Li Xin-Yuan
Department of Neurosurgery, Tongren Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Front Neurol. 2021 Jun 11;12:652931. doi: 10.3389/fneur.2021.652931. eCollection 2021.
PYGL has been reported as a glycogen degradation-related gene, which is up-regulated in many tumors. This study was designed to investigate the predictive value of high PYGL expression in patients with gliomas through bioinformatics analysis of the gene transcriptome and the single-cell sequencing data. The gene transcriptome data of 595 glioma patients from the TCGA database and the single-cell RNA sequencing data of 7,930 GBM cells from the GEO database were included in the study. Differential analysis was used to find the distribution of expression of PYGL in different groups of glioma patients. OS analysis was used to assess the influence of the high expression of PYGL on the prognosis of patients. The reliability of its prediction was evaluated by the AUC of ROC and the C-index. The GSEA be used to reveal potential mechanisms. The single-cell analysis was used to observe the high expression of PYGL in different cell groups to further analyze the mechanism of its prediction. Differential analysis identified the expression level of PYGL is positively associated with glioma malignancy. OS analysis and Cox regression analyses showed high expression of PYGL was an independent factor for poor prognosis of gliomas ( < 0.05). The AUC values were 0.838 (1-year ROC), 0.864 (3-year ROC) and 0.833 (5-year ROC). The C index was 0.81. The GSEA showed that gene sets related to MTORC1 signaling, glycolysis, hypoxia, PI3K/AKT/mTOR signaling, KRAS signaling up and angiogenesis were differentially enriched in the high PYGL expression phenotype. The single-cell sequencing data analysis showed TAMs and malignant cells in GBM tissues expressed a high level of PYGL. The high expression of PYGL is an independent predictor of poor prognosis in patients with glioma.
PYGL已被报道为一种与糖原降解相关的基因,在许多肿瘤中上调。本研究旨在通过对基因转录组和单细胞测序数据进行生物信息学分析,探讨PYGL高表达在胶质瘤患者中的预测价值。研究纳入了来自TCGA数据库的595例胶质瘤患者的基因转录组数据和来自GEO数据库的7930个胶质母细胞瘤细胞的单细胞RNA测序数据。采用差异分析来发现PYGL在不同组胶质瘤患者中的表达分布。采用OS分析来评估PYGL高表达对患者预后的影响。通过ROC曲线下面积(AUC)和C指数评估其预测的可靠性。使用基因集富集分析(GSEA)来揭示潜在机制。采用单细胞分析观察PYGL在不同细胞组中的高表达,以进一步分析其预测机制。差异分析确定PYGL的表达水平与胶质瘤恶性程度呈正相关。OS分析和Cox回归分析表明,PYGL高表达是胶质瘤预后不良的独立因素(<0.05)。AUC值分别为0.838(1年ROC)、0.864(3年ROC)和0.833(5年ROC)。C指数为0.81。GSEA显示,与MTORC1信号传导、糖酵解、缺氧、PI3K/AKT/mTOR信号传导、KRAS信号上调和血管生成相关的基因集在PYGL高表达表型中差异富集。单细胞测序数据分析显示,胶质母细胞瘤组织中的肿瘤相关巨噬细胞(TAMs)和恶性细胞表达高水平的PYGL。PYGL高表达是胶质瘤患者预后不良的独立预测指标。