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微小RNA海绵文库的构建

Generation of microRNA Sponge Library.

作者信息

Herzog Sebastian

机构信息

Department of Developmental Immunology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.

出版信息

Bio Protoc. 2018 Apr 20;8(8):e2820. doi: 10.21769/BioProtoc.2820.

Abstract

This protocol describes the generation and functional validation of microRNA (miRNA) sponge or decoy constructs. When expressed from a strong promoter, these transcripts can sequester specific miRNA:RISC complexes, thereby resulting in a derepression of endogenous target mRNA. Hence, cells expressing such sponges display a partial or full miRNA loss-of-function phenotype. Depending on the sponge sequence, the activity of any miRNA of choice can be inhibited by sponge sequestration, but it should be noted that these constructs do not seem to be specific for one particular miRNA. Rather, all miRNAs of the same family as defined by the seed sequence will be affected, albeit to a different degree.

摘要

本方案描述了微小RNA(miRNA)海绵或诱饵构建体的生成及功能验证。当从强启动子表达时,这些转录本可隔离特定的miRNA:RISC复合物,从而导致内源性靶mRNA的去抑制。因此,表达此类海绵的细胞呈现部分或完全的miRNA功能丧失表型。根据海绵序列,通过海绵隔离可抑制任何所选miRNA的活性,但应注意,这些构建体似乎并非对某一特定miRNA具有特异性。相反,由种子序列定义的同一家族的所有miRNA都会受到影响,尽管程度不同。

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本文引用的文献

1
The miR-15 family reinforces the transition from proliferation to differentiation in pre-B cells.
EMBO Rep. 2017 Sep;18(9):1604-1617. doi: 10.15252/embr.201643735. Epub 2017 Jul 13.
2
CRISPR/cas9, a novel genomic tool to knock down microRNA in vitro and in vivo.
Sci Rep. 2016 Feb 29;6:22312. doi: 10.1038/srep22312.
3
An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs.
BMC Bioinformatics. 2013;14 Suppl 2(Suppl 2):S4. doi: 10.1186/1471-2105-14-S2-S4. Epub 2013 Jan 21.
4
Stable knockdown of microRNA in vivo by lentiviral vectors.
Nat Methods. 2009 Jan;6(1):63-6. doi: 10.1038/nmeth.1277. Epub 2008 Nov 30.
5
Lentivirus-mediated antagomir expression for specific inhibition of miRNA function.
Nucleic Acids Res. 2007;35(22):e149. doi: 10.1093/nar/gkm971. Epub 2007 Nov 19.
6
MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells.
Nat Methods. 2007 Sep;4(9):721-6. doi: 10.1038/nmeth1079. Epub 2007 Aug 12.
7
Silencing of microRNAs in vivo with 'antagomirs'.
Nature. 2005 Dec 1;438(7068):685-9. doi: 10.1038/nature04303. Epub 2005 Oct 30.

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