Ju Wenhao, Liu Kai, Ouyang Shengrong, Liu Zhuo, He Feng, Wu Jianxin
Graduate School, Peking Union Medical College, Beijing, China.
Department of Biochemistry and Immunology, Capital Institute of Pediatrics, Beijing, China.
Front Cell Dev Biol. 2021 Jul 21;9:702579. doi: 10.3389/fcell.2021.702579. eCollection 2021.
In this study, we aimed to systematically profile global RNA N6-methyladenosine (mA) modification patterns in a mouse model of diabetic cardiomyopathy (DCM). Patterns of mA in DCM and normal hearts were analyzed via mA-specific methylated RNA immunoprecipitation followed by high-throughput sequencing (MeRIP-seq) and RNA sequencing (RNA-seq). mA-related mRNAs were validated by quantitative real-time PCR analysis of input and mA immunoprecipitated RNA samples from DCM and normal hearts. A total of 973 new mA peaks were detected in DCM samples and 984 differentially methylated sites were selected for further study, including 295 hypermethylated and 689 hypomethylated mA sites (fold change (FC) > 1.5, < 0.05). Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathway analyses indicated that unique mA-modified transcripts in DCM were closely linked to cardiac fibrosis, myocardial hypertrophy, and myocardial energy metabolism. Total mA levels were higher in DCM, while levels of the fat mass and obesity-associated (FTO) protein were downregulated. Overexpression of FTO in DCM model mice improved cardiac function by reducing myocardial fibrosis and myocyte hypertrophy. Overall, mA modification patterns were altered in DCM, and modification of epitranscriptomic processes, such as mA, is a potentially interesting therapeutic approach.
在本研究中,我们旨在系统地描绘糖尿病性心肌病(DCM)小鼠模型中的全球RNA N6-甲基腺嘌呤(m⁶A)修饰模式。通过m⁶A特异性甲基化RNA免疫沉淀结合高通量测序(MeRIP-seq)和RNA测序(RNA-seq)分析DCM和正常心脏中的m⁶A模式。通过对来自DCM和正常心脏的输入RNA样本和m⁶A免疫沉淀RNA样本进行定量实时PCR分析,验证了与m⁶A相关的mRNA。在DCM样本中总共检测到973个新的m⁶A峰,并选择了984个差异甲基化位点进行进一步研究,其中包括295个高甲基化和689个低甲基化的m⁶A位点(倍数变化(FC)> 1.5,< 0.05)。基因本体(GO)和京都基因与基因组百科全书(KEGG)通路分析表明,DCM中独特的m⁶A修饰转录本与心脏纤维化、心肌肥大和心肌能量代谢密切相关。DCM中的总m⁶A水平较高,而脂肪量和肥胖相关(FTO)蛋白的水平下调。在DCM模型小鼠中过表达FTO可通过减少心肌纤维化和心肌细胞肥大来改善心脏功能。总体而言,DCM中的m⁶A修饰模式发生了改变,并且对表观转录组过程(如m⁶A)的修饰是一种潜在有趣的治疗方法。