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序列上下文效应对人细胞 p53 基因三个突变热点序列中 Fapy•dG 复制的影响。

Sequence context effects of replication of Fapy•dG in three mutational hot spot sequences of the p53 gene in human cells.

机构信息

Department of Chemistry, University of Connecticut, Storrs, CT, 06269, USA.

Department of Chemistry, Johns Hopkins University, Baltimore, MD, 21218, USA.

出版信息

DNA Repair (Amst). 2021 Dec;108:103213. doi: 10.1016/j.dnarep.2021.103213. Epub 2021 Aug 16.

Abstract

Fapy•dG and 8-OxodGuo are formed in DNA from a common N7-dG radical intermediate by reaction with hydroxyl radical. Although cellular levels of Fapy•dG are often greater, its effects on replication are less well understood than those of 8-OxodGuo. In this study plasmid DNA containing Fapy•dG in three mutational hotspots of human cancers, codons 248, 249, and 273 of the p53 tumor suppressor gene, was replicated in HEK 293T cells. TLS efficiencies for the Fapy•dG containing plasmids varied from 72 to 89%, and were further reduced in polymerase-deficient cells. The mutation frequency (MF) of Fapy•dG ranged from 7.3 to 11.6%, with G→T and G→A as major mutations in codons 248 and 249 compared to primarily G→T in codon 273. Increased MF in hPol ι-, hPol κ-, and hPol ζ-deficient cells suggested that these polymerases more frequently insert the correct nucleotide dC opposite Fapy•dG, whereas decreased G→A in codons 248 and 249 and reduction of all mutations in codon 273 in hPol λ-deficient cells indicated hPol λ's involvement in Fapy•dG mutagenesis. In vitro kinetic analysis using isolated translesion synthesis polymerases and hPol λ incompletely corroborated the mutagenesis experiments, indicating codependence on other proteins in the cellular milieu. In conclusion, Fapy•dG mutagenesis is dependent on the DNA sequence context, but its bypass by the TLS polymerases is largely error-free.

摘要

Fapy•dG 和 8-OxodGuo 是由羟基自由基与 N7-dG 自由基中间产物反应在 DNA 中形成的。尽管细胞内 Fapy•dG 的水平通常更高,但它对复制的影响不如 8-OxodGuo 那么清楚。在这项研究中,含有 Fapy•dG 的质粒 DNA 在三个人类癌症突变热点中被复制,p53 肿瘤抑制基因的密码子 248、249 和 273。含 Fapy•dG 的质粒的 TLS 效率从 72%到 89%不等,在聚合酶缺陷细胞中进一步降低。Fapy•dG 的突变频率(MF)范围为 7.3%至 11.6%,与密码子 273 中主要为 G→T 相比,密码子 248 和 249 中主要为 G→A 和 G→T。在 hPol ι-、hPol κ-和 hPol ζ-缺陷细胞中 MF 增加表明这些聚合酶更频繁地在 Fapy•dG 对面插入正确的核苷酸 dC,而密码子 248 和 249 中的 G→A 减少以及 hPol λ-缺陷细胞中所有突变的减少表明 hPol λ 参与 Fapy•dG 的诱变。使用分离的跨损伤合成聚合酶和 hPol λ 的体外动力学分析不完全证实了诱变实验,表明在细胞环境中依赖其他蛋白质。总之,Fapy•dG 的诱变依赖于 DNA 序列背景,但由 TLS 聚合酶旁路的突变主要是无错误的。

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