Department of Bioproducts and Biosystems Engineering, University of Minnesota, St. Paul, Minnesota, USA.
BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA.
J Appl Microbiol. 2022 Mar;132(3):2004-2019. doi: 10.1111/jam.15311. Epub 2021 Oct 24.
In this report, we present Scenedesmus glucoliberatum PABB004, a microalga that was isolated from an association with Paramecium bursaria with the potential for application in fermentative processes and co-culture schemes due to its advantageous high sugar secretion phenotype.
We sequenced, assembled and annotated the draft genome and transcriptome for this newly reported strain. The nuclear genome has an exceptionally high GC content of 78%. Our results revealed significant sugar accumulation over a range from 6.2 to 7.8 pH units. The predicted proteome was compared with other green algae that show different sugar secretion phenotypes aiming to help uncover their common features for simple sugar secretion and those unique to S. glucoliberatum PABB004.
The evolutionary history of this organism, inferred from its genomic traits, expands our current understanding of algal mutualistic relationships involving photosynthate exchanges. S. glucoliberatum PABB004 secreted ready-to-use fermentable sugars (glucose and maltose) directly to the extracellular media achieving concentrations greater than 2.7 g/L of free glucose and 1.2 g/L of maltose in batch cultures.
A draft genome is provided for a new member of an important class of green algae. Scenedesmus glucoliberatum PABB004 secretes high levels of simple sugars over a broad pH range.
在本报告中,我们介绍了 Scenedesmus glucoliberatum PABB004,这是一种从 Paramecium bursaria 共生体中分离出来的微藻,由于其具有有利的高糖分泌表型,因此有望应用于发酵过程和共培养方案。
我们对这个新报道的菌株进行了测序、组装和注释。该核基因组具有异常高的 GC 含量(78%)。我们的结果显示,在 6.2 到 7.8 pH 单位的范围内,糖积累显著。预测的蛋白质组与表现出不同糖分泌表型的其他绿藻进行了比较,旨在帮助揭示它们用于简单糖分泌的共同特征,以及 Scenedesmus glucoliberatum PABB004 所特有的特征。
从基因组特征推断出该生物的进化历史,扩展了我们对涉及光合作用产物交换的藻类共生关系的现有理解。Scenedesmus glucoliberatum PABB004 将可直接用于发酵的游离糖(葡萄糖和麦芽糖)直接分泌到细胞外培养基中,在分批培养中,游离葡萄糖浓度超过 2.7 g/L,麦芽糖浓度超过 1.2 g/L。
为一类重要的绿藻的新成员提供了一个草案基因组。Scenedesmus glucoliberatum PABB004 在较宽的 pH 范围内分泌高水平的简单糖。