Livestock Improvement Corporation, Private Bag 3016, Hamilton 3240, New Zealand.
Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Box 7023, 75007 Uppsala, Sweden.
J Dairy Sci. 2022 Jan;105(1):3-21. doi: 10.3168/jds.2021-20927. Epub 2021 Oct 28.
For the past few decades, the international exchange of genetic materials has accelerated. This acceleration has been more substantial for dairy cattle compared with other species. The industry faced the need to put international genetic evaluation (IGE) systems in place. The Interbull Centre has been conducting IGE for various dairy cattle breeds and traits. This study reviews the past and the current status of IGE for dairy cattle, emphasizing the most prominent and well-established method of IGE, namely multiple across-country evaluation (MACE), and the challenges that should be addressed in the future of IGE. The first IGE methods were simple conversion equations. Only a limited number of common bulls between pairs of countries were considered. These bulls were a biased sample of highly selected animals, with their daughters under preferential treatment in the importing countries. Genetic relationships among animals were not considered either. The MACE method was the first IGE method based on mixed-model theory that could handle genotype by environment interaction (G × E) between countries. The G × E between countries is handled by treating the same trait in different countries as different traits, with genetic correlations less than unity between the traits. The G × E between countries is not solely due to different genetic expressions in different environments (countries), but is also attributable to different units or ways of measuring the trait, data editing, and statistical approaches and models used in different countries. The MACE method also considers different genetic means, genetic groups for unknown parents, heterogeneous genetic and residual variances among countries, and heterogeneous residual variances (precision weights for observations) within countries. Other IGE methods that came after MACE are rooted in MACE. The genomic revolution of the industry created new needs and opportunities. However, an unwanted aspect of it was genomic preselection bias. Genomic preselection causes directional information loss from pre-culled animals (bias) in statistical models for genetic and genomic evaluations, and preselected progeny of a mating are no longer a random sample of possible progeny from that mating. National genetic evaluations without genotypes are input to MACE, and biases in national evaluations are propagated internationally through MACE. Genomic preselection for the Holstein breed is a source of concern for introducing bias to MACE, especially when genomic preselection is practiced intensively in the population. However, MACE continues to be useful for other breeds, among other species, or for non-IGE purposes. Future methods will need to make optimum use of genomic information and be free of genomic preselection bias.
在过去的几十年里,国际间遗传物质的交流加速了。与其他物种相比,奶牛的这种交流加速更为明显。因此,行业需要建立国际遗传评估(IGE)系统。国际奶牛公牛组织(Interbull Centre)一直在对各种奶牛品种和性状进行 IGE。本研究回顾了奶牛 IGE 的过去和现状,强调了 IGE 中最突出和最成熟的方法,即多国联合评估(MACE),以及未来 IGE 中应解决的挑战。最初的 IGE 方法是简单的转换方程。只考虑了国家之间数量有限的共同公牛。这些公牛是高度选择动物的有偏样本,其女儿在进口国受到优待。动物之间的遗传关系也没有被考虑。MACE 方法是第一个基于混合模型理论的 IGE 方法,可以处理国家之间的基因型与环境互作(G × E)。国家之间的 G × E 通过将不同国家的同一性状视为不同的性状来处理,性状之间的遗传相关系数小于 1。国家之间的 G × E 不仅是由于不同环境(国家)中不同的基因表达,还归因于不同的单位或测量性状的方式、数据编辑以及不同国家使用的统计方法和模型。MACE 方法还考虑了不同的遗传平均值、未知父母的遗传群体、国家之间遗传和剩余方差的异质性以及国家内部剩余方差(观测值的精度权重)的异质性。MACE 之后出现的其他 IGE 方法都源于 MACE。该行业的基因组革命创造了新的需求和机会。然而,它的一个不受欢迎的方面是基因组预选偏差。基因组预选导致统计模型中来自预先淘汰动物的定向信息丢失(偏差),从而遗传和基因组评估的候选动物以及交配的预选后代不再是该交配的可能后代的随机样本。没有基因型的国家遗传评估被输入到 MACE 中,通过 MACE 将国家评估中的偏差在国际上传播。荷斯坦牛的基因组预选是向 MACE 引入偏差的一个关注点,特别是当该品种的基因组预选在种群中被密集地进行时。然而,MACE 仍然对其他品种,或其他物种,或非 IGE 目的有用。未来的方法需要充分利用基因组信息,且无基因组预选偏差。