Department of Marine Biology and Oceanography, Institut de Ciències del Mar, Barcelona, Spain.
Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, Eidgenössische Technische Hochschule Zürich, Zürich, Switzerland.
Nat Microbiol. 2021 Dec;6(12):1561-1574. doi: 10.1038/s41564-021-00979-9. Epub 2021 Nov 15.
The role of the Arctic Ocean ecosystem in climate regulation may depend on the responses of marine microorganisms to environmental change. We applied genome-resolved metagenomics to 41 Arctic seawater samples, collected at various depths in different seasons during the Tara Oceans Polar Circle expedition, to evaluate the ecology, metabolic potential and activity of resident bacteria and archaea. We assembled 530 metagenome-assembled genomes (MAGs) to form the Arctic MAGs catalogue comprising 526 species. A total of 441 MAGs belonged to species that have not previously been reported and 299 genomes showed an exclusively polar distribution. Most Arctic MAGs have large genomes and the potential for fast generation times, both of which may enable adaptation to a copiotrophic lifestyle in nutrient-rich waters. We identified 38 habitat generalists and 111 specialists in the Arctic Ocean. We also found a general prevalence of 14 mixotrophs, while chemolithoautotrophs were mostly present in the mesopelagic layer during spring and autumn. We revealed 62 MAGs classified as key Arctic species, found only in the Arctic Ocean, showing the highest gene expression values and predicted to have habitat-specific traits. The Artic MAGs catalogue will inform our understanding of polar microorganisms that drive global biogeochemical cycles.
海洋微生物对环境变化的响应可能决定着北极海洋生态系统在气候调节中的作用。我们应用基于基因组的宏基因组学技术,对采集自 Tara Oceans 极地考察队在不同季节、不同深度的 41 个北极海水样本进行了研究,以评估当地海洋细菌和古菌的生态、代谢潜能和活性。我们共组装了 530 个宏基因组组装基因组(MAG),构建了包含 526 个物种的北极 MAG 目录。其中,441 个 MAG 属于此前尚未报道过的物种,299 个基因组具有独特的极地分布特征。大多数北极 MAG 具有较大的基因组和较快的世代时间,这使它们能够适应富营养水域中的混合营养生活方式。我们在北极海洋中共鉴定出 38 种栖息地广适种和 111 种专性种。此外,我们还发现了 14 种混合营养生物的普遍存在,而化能自养生物则主要存在于春、秋两季的中层水层中。我们还揭示了 62 个被归类为关键北极物种的 MAG,这些物种仅存在于北极海洋中,具有最高的基因表达值和预测的特定栖息地特征。北极 MAG 目录将有助于我们了解驱动全球生物地球化学循环的极地微生物。