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非瘢痕体质个体在伤口愈合过程中竞争内源性 RNA 网络。

Competing Endogenous RNA Network in Non-Keloid-Prone Individuals During Wound Healing.

机构信息

The Ninth Department of Plastic Surgery Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing.

Department of Plastic Surgery, The First Affiliated Hospital of Sun Yat-sen University.

出版信息

J Craniofac Surg. 2022;33(1):29-34. doi: 10.1097/SCS.0000000000007824.

Abstract

To study the interaction between differentially expressed long non-coding RNAs (lncRNAs), microRNAs, and messenger RNAs during wound healing in normal individuals. The GSE113621 dataset was downloaded from gene expression matrix, specimens regarding non-keloid-prone individuals were selected, including items before and 6 weeks after injury. A Pearson correlation coefficient of > 0.95 was selected as the index to screen targeting relationships among different RNAs. Cytoscape was used to construct a network diagram. The expression of 2547 lncRNAs was changed during the wound healing process-1479 were upregulated and 1068 were downregulated. After analyzing competitive endogenous RNA network, 4 upregulated (MEG8, MEG3, MIR181A1HG, MIR4435-2HG) lncRNAs were found expressed during wound healing. MEG8/MEG3 may regulate fibroblast proliferation, differentiation, and apoptosis through hsa-miR-296-3p/miR-6763-5p. In-depth mining of gene expression matrix data indicated that lncRNAs and a competitive endogenous RNA regulatory network participate in the wound healing process, possibly providing novel intervention targets and treatment options for delayed wound healing.

摘要

研究正常个体伤口愈合过程中差异表达的长非编码 RNA(lncRNA)、microRNA 和信使 RNA 之间的相互作用。从基因表达矩阵中下载 GSE113621 数据集,选择非瘢痕体质个体的标本,包括损伤前和损伤后 6 周的项目。选择 Pearson 相关系数>0.95 作为筛选不同 RNA 之间靶向关系的指标。使用 Cytoscape 构建网络图。在伤口愈合过程中,2547 个 lncRNA 的表达发生变化-1479 个上调,1068 个下调。在分析竞争性内源性 RNA 网络后,发现有 4 个上调的 lncRNA(MEG8、MEG3、MIR181A1HG、MIR4435-2HG)在伤口愈合过程中表达。MEG8/MEG3 可能通过 hsa-miR-296-3p/miR-6763-5p 调节成纤维细胞的增殖、分化和凋亡。对基因表达矩阵数据的深入挖掘表明,lncRNA 和竞争性内源性 RNA 调控网络参与伤口愈合过程,可能为延迟伤口愈合提供新的干预靶点和治疗选择。

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