Wölffer Marcus, Battke Florian, Schulze Martin, Feldhahn Magdalena, Flatz Lukas, Martus Peter, Forschner Andrea
Department of Dermatology, University Hospital Tuebingen, 72076 Tuebingen, Germany.
Center for Genomics and Transcriptomics (CeGaT) GmbH, 72076 Tuebingen, Germany.
Cancers (Basel). 2022 Jan 8;14(2):302. doi: 10.3390/cancers14020302.
Immune checkpoint inhibitors (ICI) have revolutionized the therapeutic landscape of metastatic melanoma. However, ICI are often associated with immune-related adverse events (IRAE) such as colitis, hepatitis, pancreatitis, hypophysitis, pneumonitis, thyroiditis, exanthema, nephritis, myositis, encephalitis, or myocarditis. Biomarkers associated with the occurrence of IRAE would be desirable. In the literature, there is only little data available and furthermore mostly speculative, especially in view of genetic alterations. Our major aim was to check for possible associations between NGS-based genetic alterations and IRAE. We therefore analyzed 95 melanoma patients with ICI and evaluated their NGS results. We checked the data in view of potential associations between copy number variations (CNVs), small variations (VARs), human leucocyte antigen (HLA), sex, blood count parameters, pre-existing autoimmune diseases and the occurrence of IRAE. We conducted a literature research on genetic alterations hypothesized to be associated with the occurrence of IRAE. In total, we identified 39 genes that have been discussed as hypothetical biomarkers. We compared the list of these 39 genes with the tumor panel that our patients had received and focused our study on those 16 genes that were also included in the tumor panel used for NGS. Therefore, we focused our analyses on the following genes: , , , , , , , , , , , , , , , . We obtained relevant results: female sex was significantly associated with the development of hepatitis, combined immunotherapy with colitis, increased total and relative monocytes at therapy initiation were significantly associated with the development of pancreatitis, the same, pre-existing autoimmune diseases. Further significant associations were as follows: HLA homozygosity (hepatitis), and VARs on (pancreatitis). Regarding CNVs, significant markers included deletions and (IRAE), duplications and (hepatitis), and (encephalitis), and , , , and (myositis). Myositis and encephalitis, both, were associated with alterations of and , which might explain their joined appearance in clinical practice. The association between HLA homozygosity and IRAE was clarified by finding HLA-A homozygosity as determining factor. We identified several genetic alterations hypothesized in the literature to be associated with the development of IRAE and found significant results concerning pre-existing autoimmune diseases and specific blood count parameters. Our findings can help to better understand the development of IRAE in melanoma patients. NGS might be a useful screening tool, however, our findings have yet to be confirmed in larger studies.
免疫检查点抑制剂(ICI)彻底改变了转移性黑色素瘤的治疗格局。然而,ICI常常与免疫相关不良事件(IRAE)相关联,如结肠炎、肝炎、胰腺炎、垂体炎、肺炎、甲状腺炎、皮疹、肾炎、肌炎、脑炎或心肌炎。与IRAE发生相关的生物标志物将是很有必要的。在文献中,仅有少量可用数据,而且大多是推测性的,尤其是考虑到基因改变。我们的主要目的是检查基于二代测序(NGS)的基因改变与IRAE之间可能存在的关联。因此,我们分析了95例接受ICI治疗的黑色素瘤患者,并评估了他们的NGS结果。我们从拷贝数变异(CNV)、小变异(VAR)、人类白细胞抗原(HLA)、性别、血细胞计数参数、既往自身免疫性疾病以及IRAE的发生等方面检查了数据。我们对假设与IRAE发生相关的基因改变进行了文献研究。总共,我们鉴定出39个基因,这些基因已被作为假设的生物标志物进行讨论。我们将这39个基因的列表与我们患者所接受的肿瘤检测面板进行了比较,并将研究重点集中在也包含在用于NGS的肿瘤检测面板中的16个基因上。因此,我们将分析重点放在以下基因上: , , , , , , , , , , , , , , 。我们获得了相关结果:女性与肝炎的发生显著相关,联合免疫治疗与结肠炎相关,治疗开始时总单核细胞和相对单核细胞增加与胰腺炎的发生显著相关,同样,既往自身免疫性疾病也相关。进一步的显著关联如下:HLA纯合性(肝炎),以及 在 上的VARs(胰腺炎)。关于CNV,显著标志物包括 缺失和 (IRAE), 重复和 (肝炎), 以及 (脑炎),以及 , , , 和 (肌炎)。肌炎和脑炎均与 和 的改变相关,这可能解释了它们在临床实践中的共同出现。通过发现HLA - A纯合性作为决定因素,阐明了HLA纯合性与IRAE之间的关联。我们鉴定出文献中假设与IRAE发生相关的几种基因改变,并发现了关于既往自身免疫性疾病和特定血细胞计数参数的显著结果。我们的发现有助于更好地理解黑色素瘤患者中IRAE的发生情况。NGS可能是一种有用的筛查工具,然而,我们的发现尚有待在更大规模的研究中得到证实。