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江门希瓦氏菌,从养殖水中分离得到的新种。

Shewanella jiangmenensis sp. nov., isolated from aquaculture water.

机构信息

College of Life Science, Yangtze University, Jingzhou, 434025, People's Republic of China.

Key Laboratory of Agricultural Microbiomics and Precision Application, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Guangdong Microbial Culture Collection Center (GDMCC), Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China.

出版信息

Arch Microbiol. 2022 Feb 26;204(3):198. doi: 10.1007/s00203-022-02761-9.

Abstract

A Gram-stain-negative and facultatively anaerobic bacterial strain designated as JM162201 was isolated from aquaculture water for farming Pacific white shrimp (Litopenaeus vannamei). The genome size of strain JM162201 was 4,436,316 bp, and the genomic DNA G + C content was 55.0%. Phylogenetic analysis based on 16S rRNA gene sequences and genomes showed that strain JM162201 belonged to the genus Shewanella and was closely related to Shewanella litorisediminis SMK1-12 (97.1%), Shewanella khirikhana TH2012 (97.0%), and Shewanella amazonensis SB2B (96.0%). The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain JM162201 and three reference type strains were below the recognized thresholds of 95.0-96.0% (for ANI) and 70.0% (for dDDH) for species delineation. Growth occurred at 10-40 °C (optimum, 30 °C), at pH 4.0-10.0 (optimum, 7.0-8.0), and in 0-6.0% NaCl (w/v, optimum, 0-0.1%). The major cellular fatty acids of strain JM162201 were summed feature 3 (C ω7c and/or C ω6c), C ω8c, iso-C, C, and C. The predominant quinones were MK7, Q-7, and Q-8. The major polar lipids were phosphatidylethanolamine (PE) and phosphatidylglycerol (PG). Based on the polyphasic taxonomical analyses, strain JM162201 represents a novel species of the genus Shewanella, for which the name Shewanella jiangmenensis sp. nov. is proposed, with the type strain JM162201 (= GDMCC 1.2006 = KCTC 82340).

摘要

一株革兰氏阴性、兼性厌氧的细菌菌株被命名为 JM162201,它是从养殖南美白对虾(Litopenaeus vannamei)的养殖水中分离出来的。菌株 JM162201 的基因组大小为 4,436,316 bp,基因组 DNA G+C 含量为 55.0%。基于 16S rRNA 基因序列和基因组的系统发育分析表明,菌株 JM162201 属于希瓦氏菌属,与希瓦氏菌属的近缘种包括 Litorisediminis SMK1-12(97.1%)、Khirikhana TH2012(97.0%)和 Amazonensis SB2B(96.0%)最为相似。菌株 JM162201 与三个参考模式菌株的平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交(dDDH)值均低于 95.0-96.0%(ANI)和 70.0%(dDDH)的种间区分阈值。该菌株在 10-40°C(最适 30°C)、pH 值 4.0-10.0(最适 7.0-8.0)和 0-6.0%(w/v)NaCl(最适 0-0.1%)条件下生长。菌株 JM162201 的主要细胞脂肪酸为 summed feature 3(C ω7c 和/或 C ω6c)、C ω8c、iso-C、C 和 C 。主要的醌类为 MK7、Q-7 和 Q-8。主要的极性脂类为磷脂酰乙醇胺(PE)和磷脂酰甘油(PG)。基于多相分类学分析,菌株 JM162201 代表了希瓦氏菌属的一个新种,将其命名为 Shewanella jiangmenensis sp. nov.,其模式菌株为 JM162201(= GDMCC 1.2006 = KCTC 82340)。

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