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三种不同皮肤部位的中华蟾蜍()比较转录组分析。

Comparative transcriptomes of three different skin sites for the Asiatic toad ().

机构信息

Key Laboratory of Bioresources and Eco-Environment (Ministry of Education), College of Life Sciences, Sichuan University, Chengdu, Sichuan, China.

Department of Ambulatory surgery, West China Second University Hospital, Sichuan University, Chengdu, Sichuan, China.

出版信息

PeerJ. 2022 Feb 22;10:e12993. doi: 10.7717/peerj.12993. eCollection 2022.

Abstract

Toads release toxic dry secretions from glands in their skin. Toxin possesses a wide range of biological effects, but little is known about its specific gene expression pattern and regulatory mechanisms. The Asiatic toad () is widely used to produce toxin. Here, we explored the gene expression of 30 tissue samples from three different skin sites (parotoid gland, dorsal skin, and abdomen skin) of . After assembly, 783,130 unigenes with an average length of 489 bp (N50 = 556 bp) were obtained. A total of 9,248 significant differentially expressed genes (DEGs) were detected. There were 8,819 DEGs between the parotoid gland and abdomen skin and 1,299 DEGs between the dorsal skin and abdomen skin, while only 1,283 DEGs were obtained between the parotoid gland and dorsal skin. Through enrichment analysis, it was found that the detected differential gene expressions corresponded to the different functions of different skin sites. Our key findings were the genetic expression of toxin secretion, the protection function of skin, and the related genes such as , , and , . In conclusion, we provide useful transcript resources to study the gene expression and gene function of and other amphibians. The detected DEGs between different sites of the skin provided better insights into the genetic mechanisms of toxin secretion and the protection function of skin for amphibians.

摘要

蟾蜍从皮肤腺中释放出有毒的干燥分泌物。毒素具有广泛的生物学效应,但对其特定的基因表达模式和调控机制知之甚少。亚洲蟾蜍(Bufo gargarizans)被广泛用于生产毒素。在这里,我们研究了来自三个不同皮肤部位(腮腺、背部皮肤和腹部皮肤)的 30 个组织样本的基因表达。组装后,获得了 783,130 个平均长度为 489bp(N50=556bp)的 unigenes。总共检测到 9,248 个显著差异表达基因(DEGs)。腮腺和腹部皮肤之间有 8,819 个 DEGs,背部皮肤和腹部皮肤之间有 1,299 个 DEGs,而腮腺和背部皮肤之间只有 1,283 个 DEGs。通过富集分析,发现检测到的差异基因表达与不同皮肤部位的不同功能相对应。我们的主要发现是毒素分泌的遗传表达、皮肤的保护功能以及相关基因,如、、和。总之,我们提供了有用的转录资源,以研究和其他两栖动物的基因表达和基因功能。不同皮肤部位之间检测到的差异表达基因为研究毒素分泌和两栖动物皮肤保护功能的遗传机制提供了更好的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea1b/8877344/25364ba90b56/peerj-10-12993-g001.jpg

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