Department of Condensed Matter Physics, University of Zaragoza, Calle Pedro Cerbuna 12, 50009 Zaragoza, Spain; Department of Chemistry, University of Turin, Via Giuria 9, 10125 Torino, Italy.
Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina, 13, 10123 Turin, Italy.
J Inorg Biochem. 2022 Jun;231:111785. doi: 10.1016/j.jinorgbio.2022.111785. Epub 2022 Mar 2.
CYP116B5 is a self-sufficient cytochrome P450 (CYP450) with interesting catalytic properties for synthetic purposes. When isolated, its heme domain can act as a peroxygenase on different substrates of biotechnological interest. Here, by means of continuous wave and advanced EPR techniques, the coordination environment of iron in the isolated CYP116B5 heme domain (CYP116b5hd) is characterized. The ligand-free protein shows the characteristic EPR spectrum of a low-spin (S = 1/2) Fe-heme with [g = 2.440 ± 0.005, g = 2.25 ± 0.01, g = 1.92 ± 0.01]. These g-values reflect an electronic ground state very similar to classical P450 monooxygenases rather than P450 peroxygenases. Binding of imidazole results in g-values very close to the ones reported for CYP152 peroxygenases. The detection of hyperfine interactions through HYperfine Sub-level CORrElation (HYSCORE) Spectroscopy experiments, shows that this is due to a nitrogen-mediated axial coordination. This work adds a piece of experimental evidence to the research, aimed at elucidating the features that distinguish the classical P450 enzymes from peroxygenases. It shows that the electronic environment of heme iron of CYP116B5 in the resting state is similar to the classical P450 monooxygenases. Therefore, it is not the critical factor that confers to CYP116B5hd its peroxygenase-like activity, suggesting a crucial role of the protein matrix.
CYP116B5 是一种自给自足的细胞色素 P450(CYP450),具有有趣的催化特性,可用于合成目的。分离时,其血红素结构域可以作为不同生物科技感兴趣的底物的过氧化物酶。在这里,通过连续波和先进的 EPR 技术,表征了分离的 CYP116B5 血红素结构域(CYP116b5hd)中铁的配位环境。无配体的蛋白质显示出低自旋(S = 1/2)Fe-血红素的特征 EPR 谱,[g = 2.440 ± 0.005,g = 2.25 ± 0.01,g = 1.92 ± 0.01]。这些 g 值反映了与经典 P450 单加氧酶而非 P450 过氧化物酶非常相似的电子基态。咪唑的结合导致 g 值非常接近报道的 CYP152 过氧化物酶。通过 HYperfine Sub-level CORrElation(HYSCORE)光谱实验检测到超精细相互作用,表明这是由于氮介导的轴向配位。这项工作为旨在阐明区分经典 P450 酶与过氧化物酶的特征的研究增加了实验证据。它表明,CYP116B5 在静止状态下血红素铁的电子环境类似于经典的 P450 单加氧酶。因此,赋予 CYP116B5hd 过氧化物酶样活性的不是关键因素,这表明蛋白质基质起着至关重要的作用。