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捕捉对表型变异性的间接遗传效应:竞争与稳态化相遇。

Capturing indirect genetic effects on phenotypic variability: Competition meets canalization.

作者信息

Marjanovic Jovana, Mulder Han A, Rönnegård Lars, de Koning Dirk-Jan, Bijma Piter

机构信息

Animal Breeding and Genomics Wageningen University and Research Wageningen The Netherlands.

Department of Animal Breeding and Genetics Swedish University of Agricultural Sciences Uppsala Sweden.

出版信息

Evol Appl. 2022 Mar 8;15(4):694-705. doi: 10.1111/eva.13353. eCollection 2022 Apr.

Abstract

Phenotypic variability of a genotype is relevant both in natural and domestic populations. In the past two decades, variability has been studied as a heritable quantitative genetic trait in its own right, often referred to as inherited variability or environmental canalization. So far, studies on inherited variability have only considered genetic effects of the focal individual, that is, direct genetic effects on inherited variability. Observations from aquaculture populations and some plants, however, suggest that an additional source of genetic variation in inherited variability may be generated through competition. Social interactions, such as competition, are often a source of Indirect Genetic Effects (IGE). An IGE is a heritable effect of an individual on the trait value of another individual. IGEs may substantially affect heritable variation underlying the trait, and the direction and magnitude of response to selection. To understand the contribution of IGEs to evolution of environmental canalization in natural populations, and to exploit such inherited variability in animal and plant breeding, we need statistical models to capture this effect. To our knowledge, it is unknown to what extent the current statistical models commonly used for IGE and inherited variability capture the effect of competition on inherited variability. Here, we investigate the potential of current statistical models for inherited variability and trait values, to capture the direct and indirect genetic effects of competition on variability. Our results show that a direct model of inherited variability almost entirely captures the genetic sensitivity of individuals to competition, whereas an indirect model of inherited variability captures the cooperative genetic effects of individuals on their partners. Models for trait levels, however, capture only a small part of the genetic effects of competition. The estimation of direct and indirect genetic effects of competition, therefore, is possible with models for inherited variability but may require a two-step analysis.

摘要

基因型的表型变异性在自然种群和家养种群中都具有相关性。在过去二十年中,变异性本身已被作为一种可遗传的数量遗传性状进行研究,常被称为遗传变异性或环境驯化。到目前为止,关于遗传变异性的研究仅考虑了焦点个体的遗传效应,即对遗传变异性的直接遗传效应。然而,来自水产养殖种群和一些植物的观察结果表明,遗传变异性中遗传变异的另一个来源可能是通过竞争产生的。社会互动,如竞争,往往是间接遗传效应(IGE)的一个来源。间接遗传效应是一个个体对另一个个体性状值的可遗传效应。间接遗传效应可能会显著影响性状潜在的遗传变异,以及对选择的反应方向和幅度。为了理解间接遗传效应在自然种群环境驯化进化中的作用,并在动植物育种中利用这种遗传变异性,我们需要统计模型来捕捉这种效应。据我们所知,目前常用于间接遗传效应和遗传变异性的统计模型在多大程度上捕捉了竞争对遗传变异性的影响尚不清楚。在这里,我们研究了当前用于遗传变异性和性状值的统计模型捕捉竞争对变异性直接和间接遗传效应的潜力。我们的结果表明,遗传变异性的直接模型几乎完全捕捉了个体对竞争的遗传敏感性,而遗传变异性的间接模型捕捉了个体对其伙伴的协同遗传效应。然而,性状水平模型仅捕捉了竞争遗传效应的一小部分。因此,利用遗传变异性模型可以估计竞争的直接和间接遗传效应,但可能需要两步分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ffb/9046766/1d04e689813b/EVA-15-694-g003.jpg

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