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2-(-(2-羟苯基)-亚甲基)-氨基)烟酸的抗菌潜力:实验、密度泛函理论研究及分子对接方法

Antibacterial Potential of 2-(-(2-Hydroxyphenyl)-methylidene)-amino)nicotinic Acid: Experimental, DFT Studies, and Molecular Docking Approach.

作者信息

Osigbemhe Izuagbe G, Louis Hitler, Khan Emmanuel M, Etim Emmanuel E, Oyo-Ita Emmanuella E, Oviawe Amoawe P, Edet Henry O, Obuye Faith

机构信息

Department of Industrial Chemistry, Federal University Lokoja, Lokoja, Kogi State, Nigeria.

Computational and Bio-Simulation Research Group, University of Calabar, Calabar, Nigeria.

出版信息

Appl Biochem Biotechnol. 2022 Dec;194(12):5680-5701. doi: 10.1007/s12010-022-04054-9. Epub 2022 Jul 8.

Abstract

The problems associated with antibacterial drug discovery have kept the model of antibacterial drug to an extraordinary low level. Humans carry millions of bacteria; some species of bacteria can cause infectious disease, while some are pathogenic. Infectious bacteria which can reproduce quickly in the body can cause diseases such as tuberculosis, cholera, pneumonia, and typhoid, thus arises an urgent need to develop new drugs. Herein, 2-{[(2-hydroxyphenyl)methylidene]amino}nicotinic acid was synthesized from the condensation of o-phenylenediamine and 5-nitrosalicaldehyde followed by detailed characterization by ultraviolet-visible spectroscopy, vibrational studies FT-IR, nuclear magnetic resonance (H-NMR, C-NMR), and gas chromatography coupled with mass spectroscopy (GC-MS). The complex synthesized was screened against selected microbes in order to establish their potential antimicrobial activity using selected known drugs as reference. From the results obtained, the Schiff base exhibited antimicrobial activity against all the tested microorganisms except Candida albicans isolate, which exhibited zero diameter zone of inhibition. The theoretical investigations of the synthesized compounds were computed using density functional theory (DFT) at the B3LYP/6-311 +  + G(d, p) level of theory and in silico molecular docking simulation. By comparing binding affinity of the studied compound and the standard drug (ampicillin), the studied compound docked against bacterial protein showed a high binding affinity for E. coli 6.6 kcal/mol and makes it effective as an antibacterial agent for E. coli.

摘要

与抗菌药物发现相关的问题使抗菌药物的研发水平一直处于极低的状态。人体内携带数以百万计的细菌;有些细菌种类会引发传染病,而有些则具有致病性。能在体内快速繁殖的感染性细菌会导致诸如肺结核、霍乱、肺炎和伤寒等疾病,因此迫切需要研发新药。在此,通过邻苯二胺与5-亚硝基水杨醛缩合反应合成了2-{[(2-羟基苯基)亚甲基]氨基}烟酸,随后通过紫外-可见光谱、傅里叶变换红外光谱(FT-IR)、核磁共振(氢谱、碳谱)以及气相色谱-质谱联用(GC-MS)对其进行了详细表征。以选定的已知药物为参照,对合成的配合物针对选定的微生物进行了筛选,以确定其潜在的抗菌活性。从所得结果来看,席夫碱对除白色念珠菌分离株外的所有受试微生物均表现出抗菌活性,白色念珠菌分离株的抑菌圈直径为零。使用密度泛函理论(DFT)在B3LYP/6-311++G(d, p)理论水平上对合成化合物进行了理论研究,并进行了计算机辅助分子对接模拟。通过比较所研究化合物与标准药物(氨苄青霉素)的结合亲和力,所研究化合物与细菌蛋白对接后对大肠杆菌显示出较高的结合亲和力,为6.6千卡/摩尔,使其成为一种对大肠杆菌有效的抗菌剂。

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