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假单胞菌 S16 的酶假氧尼古丁胺氧化酶不是氧化酶,而是一种脱氢酶。

The enzyme pseudooxynicotine amine oxidase from Pseudomonas putida S16 is not an oxidase, but a dehydrogenase.

机构信息

Department of Chemistry, Western Michigan University, Kalamazoo, Michigan, USA.

Howard Hughes Medical Institute, University of Michigan, Ann Arbor, Michigan, USA; Department of Biophysics, University of Michigan, Ann Arbor, Michigan, USA.

出版信息

J Biol Chem. 2022 Aug;298(8):102251. doi: 10.1016/j.jbc.2022.102251. Epub 2022 Jul 11.

DOI:10.1016/j.jbc.2022.102251
PMID:35835223
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9396064/
Abstract

The soil-dwelling bacterium Pseudomonas putida S16 can survive on nicotine as its sole carbon and nitrogen source. The enzymes nicotine oxidoreductase (NicA2) and pseudooxynicotine amine oxidase (Pnao), both members of the flavin-containing amine oxidase family, catalyze the first two steps in the nicotine catabolism pathway. Our laboratory has previously shown that, contrary to other members of its enzyme family, NicA2 is actually a dehydrogenase that uses a cytochrome c protein (CycN) as its electron acceptor. The natural electron acceptor for Pnao is unknown; however, within the P. putida S16 genome, pnao forms an operon with cycN and nicA2, leading us to hypothesize that Pnao may also be a dehydrogenase that uses CycN as its electron acceptor. Here we characterized the kinetic properties of Pnao and show that Pnao is poorly oxidized by O, but can be rapidly oxidized by CycN, indicating that Pnao indeed acts as a dehydrogenase that uses CycN as its oxidant. Comparing steady-state kinetics with transient kinetic experiments revealed that product release primarily limits turnover by Pnao. We also resolved the crystal structure of Pnao at 2.60 Å, which shows that Pnao has a similar structural fold as NicA2. Furthermore, rigid-body docking of the structure of CycN with Pnao and NicA2 identified a potential conserved binding site for CycN on these two enzymes. Taken together, our results demonstrate that although Pnao and NicA2 show a high degree of similarity to flavin containing amine oxidases that use dioxygen directly, both enzymes are actually dehydrogenases.

摘要

土壤细菌假单胞菌 S16 可以以尼古丁作为唯一的碳源和氮源生存。尼古丁氧化还原酶 (NicA2) 和假氧烟碱胺氧化酶 (Pnao) 这两种酶都是黄素胺氧化酶家族的成员,催化尼古丁分解代谢途径的前两个步骤。我们实验室之前的研究表明,与该酶家族的其他成员不同,NicA2 实际上是一种脱氢酶,它使用细胞色素 c 蛋白 (CycN) 作为其电子受体。Pnao 的天然电子受体尚不清楚;然而,在 P. putida S16 基因组中,pnao 与 cycN 和 nicA2 形成一个操纵子,这使我们假设 Pnao 也可能是一种使用 CycN 作为其电子受体的脱氢酶。在这里,我们对 Pnao 的动力学特性进行了表征,并表明 Pnao 对 O 的氧化作用很差,但可以被 CycN 迅速氧化,这表明 Pnao 确实是一种使用 CycN 作为氧化剂的脱氢酶。将稳态动力学与瞬态动力学实验进行比较表明,产物释放主要限制了 Pnao 的周转率。我们还解析了 Pnao 的 2.60 Å 晶体结构,该结构显示 Pnao 具有与 NicA2 相似的结构折叠。此外,将 CycN 的结构与 Pnao 和 NicA2 的刚性对接确定了 CycN 在这两种酶上的潜在保守结合位点。综上所述,我们的结果表明,尽管 Pnao 和 NicA2 与直接使用分子氧的黄素胺氧化酶具有高度相似性,但这两种酶实际上都是脱氢酶。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/b06f113fc347/gr14.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/b06f113fc347/gr14.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/3050c19a0ecc/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/19e978a4f3d3/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/ba5f9dd53a8b/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/a384556925b9/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/1544fdc8ad90/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/633020291441/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/e9eda72a5f61/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/f25bf2c43f9d/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/712c3bb0def0/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/4eb8047f38e6/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/46e0c6f9b7f3/gr11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/d45b5091e1a7/gr12.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/88dcfdd0c5bb/gr13.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d760/9396064/b06f113fc347/gr14.jpg

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