Suppr超能文献

分枝杆菌噬菌体SynergyX、Abinghost、Bananafish和Delton的全基因组序列

Complete Genome Sequences of Mycobacteriophages SynergyX, Abinghost, Bananafish, and Delton.

作者信息

London Laricca Y, Ayuk Mary A, Black Amia C, Cheung Laraine, Robinson Delandra M, Thomas D'nai N, Warner Marcie H, Allen Adrian D, Ghosh Somiranjan, Gugssa Ayele, Ullah Hemayet, Bassey Glory B, Fernando Lourds M, Moore Madison M, Oliver Jerome J, Irabor Esohe G, Roy Swagota D, Quagraine Benedict K, Smith Michael, Anderson Winston A, Robinson Courtney J

机构信息

Department of Biological and Environmental Sciences, Alabama A&M University, Normal, Alabama, USA.

Department of Biology, Howard University, Washington, DC, USA.

出版信息

Microbiol Resour Announc. 2022 Aug 18;11(8):e0028622. doi: 10.1128/mra.00286-22. Epub 2022 Jul 11.

DOI:10.1128/mra.00286-22
PMID:35863046
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9387249/
Abstract

Four lytic mycobacteriophages, namely, SynergyX, Abinghost, Bananafish, and Delton, were isolated from soil in Washington, DC, using the bacterial host Mycobacterium smegmatis mc155. Analysis of the genomes revealed that they belong to two subclusters of actinobacteriophage cluster B (subclusters B2 and B3) and subcluster D1 of cluster D.

摘要

利用耻垢分枝杆菌mc155作为细菌宿主，从华盛顿特区的土壤中分离出四种裂解性分枝杆菌噬菌体，即SynergyX、Abinghost、Bananafish和Delton。基因组分析表明，它们属于放线菌噬菌体B簇的两个亚簇（B2和B3亚簇）以及D簇的D1亚簇。

相似文献

1
Complete Genome Sequences of Mycobacteriophages SynergyX, Abinghost, Bananafish, and Delton.分枝杆菌噬菌体SynergyX、Abinghost、Bananafish和Delton的全基因组序列
Microbiol Resour Announc. 2022 Aug 18;11(8):e0028622. doi: 10.1128/mra.00286-22. Epub 2022 Jul 11.
2
Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U.对从巴西圣保罗动物园基金会的堆肥中分离出的分枝杆菌和分枝杆菌噬菌体进行表征，并创建新的分枝杆菌噬菌体U簇。
BMC Microbiol. 2016 Jun 17;16(1):111. doi: 10.1186/s12866-016-0734-3.
3
Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes.具有异常大量tRNA同型异构体库的分枝杆菌噬菌体Bongo、PegLeg和Rey的聚类M
J Virol. 2014 Mar;88(5):2461-80. doi: 10.1128/JVI.03363-13. Epub 2013 Dec 11.
4
Complete Genome Sequences of Mycobacteriophages Dallas and Jonghyun.分枝杆菌噬菌体达拉斯和钟铉的全基因组序列
Microbiol Resour Announc. 2021 Jul 8;10(27):e0030421. doi: 10.1128/MRA.00304-21.
5
Genome Sequences of Three Cluster C Mycobacteriophages, Bipolarisk, Bread, and FudgeTart.三种C群分枝杆菌噬菌体Bipolarisk、Bread和FudgeTart的基因组序列
Microbiol Resour Announc. 2019 Jul 11;8(28):e00290-19. doi: 10.1128/MRA.00290-19.
6
Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih.A群分枝杆菌噬菌体BobSwaget、Fred313、KADY、Lokk、MyraDee、Stagni和StepMih的全基因组序列
Genome Announc. 2017 Oct 26;5(43):e01182-17. doi: 10.1128/genomeA.01182-17.
7
Complete Genome Sequences of Cluster F Mycobacteriophages EleanorGeorge, Mattes, and Spikelee.F簇分枝杆菌噬菌体EleanorGeorge、Mattes和Spikelee的全基因组序列
Microbiol Resour Announc. 2019 Aug 8;8(32):e00660-19. doi: 10.1128/MRA.00660-19.
8
Genome Sequences of Cluster K Mycobacteriophages Deby, LaterM, LilPharaoh, Paola, SgtBeansprout, and Sulley.K簇分枝杆菌噬菌体Deby、LaterM、LilPharaoh、Paola、SgtBeansprout和Sulley的基因组序列
Microbiol Resour Announc. 2019 Jan 10;8(2). doi: 10.1128/MRA.01481-18. eCollection 2019 Jan.
9
Complete Genome Sequences of Mycobacteriophages Kwksand96 and Cane17.分枝杆菌噬菌体Kwksand96和Cane17的全基因组序列
Microbiol Resour Announc. 2018 Nov 1;7(17). doi: 10.1128/MRA.01182-18. eCollection 2018 Nov.
10
Mycobacteriophage CRB2 defines a new subcluster in mycobacteriophage classification.分枝杆菌噬菌体 CRB2 定义了分枝杆菌噬菌体分类中的一个新亚群。
PLoS One. 2019 Feb 27;14(2):e0212365. doi: 10.1371/journal.pone.0212365. eCollection 2019.

本文引用的文献

1
STAT: a fast, scalable, MinHash-based k-mer tool to assess Sequence Read Archive next-generation sequence submissions.STAT：一种快速、可扩展的基于 MinHash 的 k-mer 工具，用于评估 Sequence Read Archive 下一代序列提交。
Genome Biol. 2021 Sep 20;22(1):270. doi: 10.1186/s13059-021-02490-0.
2
Complete Genome Sequences of Mycobacteriophages Dallas and Jonghyun.分枝杆菌噬菌体达拉斯和钟铉的全基因组序列
Microbiol Resour Announc. 2021 Jul 8;10(27):e0030421. doi: 10.1128/MRA.00304-21.
3
Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.完整噬菌体基因组的测序、组装与完成
Methods Mol Biol. 2018;1681:109-125. doi: 10.1007/978-1-4939-7343-9_9.
4
Bacteriophage evolution differs by host, lifestyle and genome.噬菌体的进化因宿主、生活方式和基因组而异。
Nat Microbiol. 2017 Jul 10;2:17112. doi: 10.1038/nmicrobiol.2017.112.
5
PhagesDB: the actinobacteriophage database.噬菌体数据库：放线菌噬菌体数据库。
Bioinformatics. 2017 Mar 1;33(5):784-786. doi: 10.1093/bioinformatics/btw711.
6
CDD: NCBI's conserved domain database.CDD：美国国家生物技术信息中心的保守结构域数据库。
Nucleic Acids Res. 2015 Jan;43(Database issue):D222-6. doi: 10.1093/nar/gku1221. Epub 2014 Nov 20.
7
A broadly implementable research course in phage discovery and genomics for first-year undergraduate students.一门面向本科一年级学生的、可广泛实施的噬菌体发现与基因组学研究课程。
mBio. 2014 Feb 4;5(1):e01051-13. doi: 10.1128/mBio.01051-13.
8
Consed: a graphical editor for next-generation sequencing.Consed：下一代测序的图形编辑器。
Bioinformatics. 2013 Nov 15;29(22):2936-7. doi: 10.1093/bioinformatics/btt515. Epub 2013 Aug 31.
9
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
10
Genome sequencing in microfabricated high-density picolitre reactors.微制造高密度皮升反应器中的基因组测序
Nature. 2005 Sep 15;437(7057):376-80. doi: 10.1038/nature03959. Epub 2005 Jul 31.

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验