Institute of Biochemistry and Genetics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences, 450054 Ufa, Russia.
Bashkir State Medical University, 450008 Ufa, Russia.
Genes (Basel). 2022 Jul 20;13(7):1281. doi: 10.3390/genes13071281.
The polygenic scores (PGSs) are developed to help clinicians in distinguishing individuals at high risk of developing disease outcomes from the general population. Clear cell renal cell carcinoma (ccRCC) is a complex disorder that involves numerous biological pathways, one of the most important of which is responsible for the microRNA biogenesis machinery. Here, we defined the biological-pathway-specific PGS in a case-control study of ccRCC in the Volga-Ural region of the Eurasia continent. We evaluated 28 DNA SNP variants, located in microRNA biogenesis genes, in 464 individuals with clinically diagnosed ccRCC and 1042 individuals without the disease. Individual genetic risks were defined using the SNP-variant effects derived from the ccRCC association analysis. The final weighted and unweighted PGS models were based on 21 SNPs, and 7 SNPs were excluded due to high LD. In our dataset, microRNA-machinery-weighted PGS revealed 1.69-fold higher odds (95% CI [1.51-1.91]) for ccRCC risk in individuals with ccRCC compared with controls with a -value of 2.0 × 10. The microRNA biogenesis pathway weighted PGS predicted the risk of ccRCC with an area under the curve (AUC) = 0.642 (95%nCI [0.61-0.67]). Our findings indicate that DNA variants of microRNA machinery genes modulate the risk of ccRCC in Volga-Ural populations. Moreover, larger powerful genome-wide association studies are needed to reveal a wider range of genetic variants affecting microRNA processing. Biological-pathway-based PGSs will advance the development of innovative screening systems for future stratified medicine approaches in ccRCC.
多基因评分(PGS)旨在帮助临床医生区分具有疾病发生风险的个体与普通人群。透明细胞肾细胞癌(ccRCC)是一种复杂的疾病,涉及多个生物学途径,其中最重要的途径之一是负责 microRNA 生物发生机制。在这里,我们在欧亚大陆伏尔加-乌拉尔地区的 ccRCC 病例对照研究中定义了生物学途径特异性 PGS。我们评估了 464 名临床诊断为 ccRCC 的个体和 1042 名无该疾病的个体中 28 个位于 microRNA 生物发生基因中的 DNA SNP 变体。个体遗传风险是使用源自 ccRCC 关联分析的 SNP 变体效应来定义的。最终加权和未加权的 PGS 模型基于 21 个 SNP,由于高度 LD,有 7 个 SNP 被排除在外。在我们的数据集,microRNA 机械加权 PGS 显示与对照组相比,患有 ccRCC 的个体的 ccRCC 风险高出 1.69 倍(95%CI [1.51-1.91]),P 值为 2.0×10。microRNA 生物发生途径加权 PGS 预测 ccRCC 的风险,AUC=0.642(95%nCI [0.61-0.67])。我们的研究结果表明,microRNA 机械基因的 DNA 变体调节了伏尔加-乌拉尔人群中 ccRCC 的风险。此外,需要更大的、强大的全基因组关联研究来揭示影响 microRNA 加工的更广泛的遗传变异。基于生物学途径的 PGS 将推进创新的筛查系统的发展,为未来的 ccRCC 分层医学方法提供支持。