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一种基于铜死亡相关长链非编码RNA的新型风险模型预测了皮肤黑色素瘤患者的预后并揭示了其免疫微环境格局。

A novel risk model based on cuproptosis-related lncRNAs predicted prognosis and indicated immune microenvironment landscape of patients with cutaneous melanoma.

作者信息

Zhou Yi, Shu Qi, Fu Zailin, Wang Chen, Gu Jianrong, Li Jianbo, Chen Yifang, Xie Minghua

机构信息

Department of Pharmacy, First People's Hospital of Linping District, Hangzhou, ZG, China.

The Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Institute of Basic Medicine and Cancer (IBMC), Chinese Academy of Sciences, Hangzhou, China.

出版信息

Front Genet. 2022 Jul 22;13:959456. doi: 10.3389/fgene.2022.959456. eCollection 2022.

Abstract

Cutaneous melanoma (CM) is an aggressive form of malignancy with poor prognostic value. Cuproptosis is a novel type of cell death regulatory mechanism in tumors. However, the role of cuproptosis-related long noncoding RNAs (lncRNAs) in CM remains elusive. The cuproptosis-related lncRNAs were identified using the Pearson correlation algorithm. Through the univariate and multivariate Cox regression analysis, the prognosis of seven lncRNAs associated with cuproptosis was established and a new risk model was constructed. ESTIMATE, CIBERSORT, and single sample gene set enrichment analyses (ssGSEA) were applied to evaluate the immune microenvironment landscape. The Kaplan-Meier survival analysis revealed that the overall survival (OS) of CM patients in the high-risk group was remarkably lower than that of the low-risk group. The result of the validated cohort and the training cohort indicated that the risk model could produce an accurate prediction of the prognosis of CM. The nomogram result demonstrated that the risk score based on the seven prognostic cuproptosis-related lncRNAs was an independent prognostic indicator feature that distinguished it from other clinical features. The result of the immune microenvironment landscape indicated that the low-risk group showed better immunity than high-risk group. The immunophenoscore (IPS) and immune checkpoints results conveyed a better benefit potential for immunotherapy clinical application in the low-risk groups. The enrichment analysis and the gene set variation analysis (GSVA) were adopted to reveal the role of cuproptosis-related lncRNAs mediated by the immune-related signaling pathways in the development of CM. Altogether, the construction of the risk model based on cuproptosis-related lncRNAs can accurately predict the prognosis of CM and indicate the immune microenvironment of CM, providing a new perspective for the future clinical treatment of CM.

摘要

皮肤黑色素瘤(CM)是一种侵袭性恶性肿瘤,预后价值较差。铜死亡是肿瘤中一种新型的细胞死亡调控机制。然而,铜死亡相关长链非编码RNA(lncRNA)在CM中的作用仍不清楚。使用Pearson相关算法鉴定了铜死亡相关lncRNA。通过单因素和多因素Cox回归分析,确定了7种与铜死亡相关lncRNA的预后情况,并构建了一个新的风险模型。应用ESTIMATE、CIBERSORT和单样本基因集富集分析(ssGSEA)来评估免疫微环境格局。Kaplan-Meier生存分析显示,高危组CM患者的总生存期(OS)明显低于低危组。验证队列和训练队列的结果表明,该风险模型可以准确预测CM的预后。列线图结果表明,基于7种与铜死亡相关的预后lncRNA的风险评分是一个独立的预后指标特征,使其有别于其他临床特征。免疫微环境格局结果表明,低危组的免疫功能优于高危组。免疫表型评分(IPS)和免疫检查点结果表明,低危组在免疫治疗临床应用方面具有更好的获益潜力。采用富集分析和基因集变异分析(GSVA)来揭示免疫相关信号通路介导的铜死亡相关lncRNA在CM发生发展中的作用。总之,基于铜死亡相关lncRNA构建的风险模型可以准确预测CM的预后,并指示CM的免疫微环境,为CM未来的临床治疗提供了新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc5b/9354044/f5a49d02493d/fgene-13-959456-g001.jpg

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