Suppr超能文献

‘富贵’(蔷薇科)的完整叶绿体基因组

The complete chloroplast genome of 'Fugui' (Rosaceae).

作者信息

Wang Zheng-Feng, Yang Xue-Cheng, Zheng Ming-Xuan, Zhou Qing

机构信息

Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.

Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2022 Aug 26;7(8):1534-1535. doi: 10.1080/23802359.2022.2106796. eCollection 2022.

Abstract

'Fugui' is newly bred cultivar. Here, we report its complete chloroplast genome. The length of the 'Fugui' chloroplast genome is 157,948 bp, with a large single-copy region of 85,948 bp, a small single-copy region of 19,128 bp and a pair of inverted repeat regions of 26,436 bp each. The genome contains 90 protein-coding genes, 65 transfer RNA genes and 9 ribosomal RNA genes. In addition, the genome contains 67 simple sequence repeats. Phylogenetic analysis revealed that 'Fugui' is genetically related to previously reported .

摘要

‘富贵’是新培育的品种。在此,我们报道其完整的叶绿体基因组。‘富贵’叶绿体基因组长度为157,948 bp,其中大单拷贝区域为85,948 bp,小单拷贝区域为19,128 bp,一对反向重复区域各为26,436 bp。该基因组包含90个蛋白质编码基因、65个转运RNA基因和9个核糖体RNA基因。此外,该基因组包含67个简单序列重复。系统发育分析表明,‘富贵’在遗传上与先前报道的[相关内容缺失]相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d50/9423843/53b3e47dd9d1/TMDN_A_2106796_F0001_C.jpg

相似文献

1
The complete chloroplast genome of 'Fugui' (Rosaceae).
Mitochondrial DNA B Resour. 2022 Aug 26;7(8):1534-1535. doi: 10.1080/23802359.2022.2106796. eCollection 2022.
2
Chloroplast characterizations and phylogenetic location of a common ornamental cherry cultivar, Kanhizakura-plena (Rosaceae).
Mitochondrial DNA B Resour. 2019 Nov 12;4(2):3938-3940. doi: 10.1080/23802359.2019.1687354.
3
The complete chloroplast genome sequence of .
Mitochondrial DNA B Resour. 2019 Oct 11;4(2):3469-3470. doi: 10.1080/23802359.2019.1674710.
4
Basic chloroplast characterizations of x praecox, a warm-adapted cherry cultivar in South China (Rosaceae).
Mitochondrial DNA B Resour. 2019 Nov 14;4(2):3945-3947. doi: 10.1080/23802359.2019.1688109.
5
The chloroplast genome of (Rosaceae).
Mitochondrial DNA B Resour. 2019 Nov 13;4(2):4033-4034. doi: 10.1080/23802359.2019.1688723.
6
The complete chloroplast genome sequence of cultivated cv. 'Sovetskiy'.
Mitochondrial DNA B Resour. 2021 Sep 9;6(10):2882-2883. doi: 10.1080/23802359.2021.1972861. eCollection 2021.
7
Complete chloroplast genome of Ulleung Island endemic flowering cherry, (Rosaceae), in Korea.
Mitochondrial DNA B Resour. 2018 Feb 24;3(1):274-275. doi: 10.1080/23802359.2018.1443034.
8
The complete chloroplast genome sequence of cultivar 'Zuili' (Rosaceae).
Mitochondrial DNA B Resour. 2024 Feb 12;9(2):277-280. doi: 10.1080/23802359.2024.2316068. eCollection 2024.
9
The complete chloroplast genome of (Ericaceae).
Mitochondrial DNA B Resour. 2021 Aug 2;6(9):2538-2540. doi: 10.1080/23802359.2021.1959439. eCollection 2021.
10
Complete Chloroplast Genome Sequence Of (Rosaceae).
Mitochondrial DNA B Resour. 2018 Aug 10;3(2):888-889. doi: 10.1080/23802359.2018.1501325.

本文引用的文献

2
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.
Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
3
CPGAVAS2, an integrated plastome sequence annotator and analyzer.
Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73. doi: 10.1093/nar/gkz345.
4
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.
Mol Biol Evol. 2017 Dec 1;34(12):3299-3302. doi: 10.1093/molbev/msx248.
5
GeSeq - versatile and accurate annotation of organelle genomes.
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
6
MISA-web: a web server for microsatellite prediction.
Bioinformatics. 2017 Aug 15;33(16):2583-2585. doi: 10.1093/bioinformatics/btx198.
7
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
8
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验