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运用生物信息学方法鉴定与生存相关的癌 miRNA,作为基于 miRNA 的肺腺癌治疗的潜在靶点。

Using bioinformatics approaches to identify survival-related oncomiRs as potential targets of miRNA-based treatments for lung adenocarcinoma.

作者信息

Liu Chia-Hsin, Liu Shu-Hsuan, Lai Yo-Liang, Cho Yi-Chun, Chen Fang-Hsin, Lin Li-Jie, Peng Pei-Hua, Li Chia-Yang, Wang Shu-Chi, Chen Ji-Lin, Wu Heng-Hsiung, Wu Min-Zu, Sher Yuh-Pyng, Cheng Wei-Chung, Hsu Kai-Wen

机构信息

Research Center for Cancer Biology, China Medical University, Taichung, Taiwan.

Department of Radiation Oncology, China Medical University Hospital, Taichung, Taiwan.

出版信息

Comput Struct Biotechnol J. 2022 Aug 22;20:4626-4635. doi: 10.1016/j.csbj.2022.08.042. eCollection 2022.

Abstract

Lung cancer is a major cause of cancer-associated deaths worldwide, and lung adenocarcinoma (LUAD) is the most common lung cancer subtype. Micro RNAs (miRNAs) regulate the pattern of gene expression in multiple cancer types and have been explored as potential drug development targets. To develop an oncomiR-based panel, we identified miRNA candidates that show differential expression patterns and are relevant to the worse 5-year overall survival outcomes in LUAD patient samples. We further evaluated various combinations of miRNA candidates for association with 5-year overall survival and identified a four-miRNA panel: miR-9-5p, miR-1246, miR-31-3p, and miR-3136-5p. The combination of these four miRNAs outperformed any single miRNA for predicting 5-year overall survival (hazard ratio [HR]: 3.47, log-rank p-value = 0.000271). Experiments were performed on lung cancer cell lines and animal models to validate the effects of these miRNAs. The results showed that singly transfected antagomiRs largely inhibited cell growth, migration, and invasion, and the combination of all four antagomiRs considerably reduced cell numbers, which is twice as effective as any single miRNA-targeted transfected. The studies revealed that antagomiR-mediated knockdown of all four miRNAs significantly reduced tumor growth and metastatic ability of lung cancer cells compared to the negative control group. The success of these and in vitro experiments suggested that these four identified oncomiRs may have therapeutic potential.

摘要

肺癌是全球癌症相关死亡的主要原因,肺腺癌(LUAD)是最常见的肺癌亚型。微小RNA(miRNA)可调节多种癌症类型中的基因表达模式,并已被探索作为潜在的药物开发靶点。为了开发一个基于致癌miRNA的组合,我们鉴定了在LUAD患者样本中显示出差异表达模式且与较差的5年总生存结果相关的miRNA候选物。我们进一步评估了miRNA候选物的各种组合与5年总生存的关联,并确定了一个包含四个miRNA的组合:miR-9-5p、miR-1246、miR-31-3p和miR-3136-5p。这四种miRNA的组合在预测5年总生存方面优于任何单个miRNA(风险比[HR]:3.47,对数秩p值 = 0.000271)。我们在肺癌细胞系和动物模型上进行了实验,以验证这些miRNA的作用。结果表明,单独转染的抗miR在很大程度上抑制了细胞生长、迁移和侵袭,并且所有四种抗miR的组合显著减少了细胞数量,其效果是任何单个miRNA靶向转染的两倍。研究表明,与阴性对照组相比,抗miR介导的所有四种miRNA的敲低显著降低了肺癌细胞的肿瘤生长和转移能力。这些体内和体外实验的成功表明,这四种鉴定出的致癌miRNA可能具有治疗潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b6a/9449502/2bc417d661c2/ga1.jpg

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